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RTP_11222018_0_1um_scaffold_1003

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_1003_1
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1..279
DNA (279bp) protein (93aa)
FAD dependent oxidoreductase n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DQ62_METS0
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ADI29433.1}; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
RTP_11222018_0_1um_scaffold_1003_2
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(301..1800)
DNA (1500bp) protein (500aa)
Transcriptional regulator, GntR family with aminotransferase domain n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXK3_HALNC
GntR family transcriptional regulator
Transcriptional regulator, GntR family with aminotransferase domain {ECO:0000313|EMBL:ACX97191.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
RTP_11222018_0_1um_scaffold_1003_3
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2068..2844
DNA (777bp) protein (259aa)
gamma-glutamyl-gamma-aminobutyrate hydrolase (EC:3.5.1.94)
Gamma-glutamyl-gamma-aminobutyrate hydrolase {ECO:0000313|EMBL:ACX97190.1}; EC=3.5.1.94 {ECO:0000313|EMBL:ACX97190.1};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Gamma-glutamyl-gamma-aminobutyrate hydrolase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXK2_HALNC
RTP_11222018_0_1um_scaffold_1003_4
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2871..4241
DNA (1371bp) protein (457aa)
glutamate--putrescine ligase (EC:6.3.1.11)
Glutamate--putrescine ligase {ECO:0000313|EMBL:ACX97189.1}; EC=6.3.1.11 {ECO:0000313|EMBL:ACX97189.1};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Glutamate--putrescine ligase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXK1_HALNC
RTP_11222018_0_1um_scaffold_1003_5
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4298..5689
DNA (1392bp) protein (464aa)
Aminotransferase class-III n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXK0_HALNC
class III aminotransferase
Aminotransferase class-III {ECO:0000313|EMBL:ACX97188.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
RTP_11222018_0_1um_scaffold_1003_6
unknown

Not on your lists

5686..5811
DNA (126bp) protein (42aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_1003_7
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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5822..6943
DNA (1122bp) protein (374aa)
Putrescine-binding periplasmic protein n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DQ78_METS0
family 1 extracellular solute-binding protein
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
RTP_11222018_0_1um_scaffold_1003_8
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7038..8153
DNA (1116bp) protein (372aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
Spermidine/putrescine ABC transporter ATPase subunit n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DQ79_METS0
spermidine/putrescine ABC transporter ATPase
RTP_11222018_0_1um_scaffold_1003_9
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8150..9061
DNA (912bp) protein (304aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DQ80_METS0
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADI29451.1}; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
RTP_11222018_0_1um_scaffold_1003_10
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9058..9909
DNA (852bp) protein (284aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DQ81_METS0
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADI29452.1}; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
RTP_11222018_0_1um_scaffold_1003_11
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9920..11380
DNA (1461bp) protein (487aa)
succinate-semialdehyde dehydrogenase (EC:1.2.1.24)
Succinic semialdehyde dehydrogenase {ECO:0000313|EMBL:ACX97182.1}; EC=1.2.1.24 {ECO:0000313|EMBL:ACX97182.1};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Succinic semialdehyde dehydrogenase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KX62_HALNC
RTP_11222018_0_1um_scaffold_1003_12
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11453..12940
DNA (1488bp) protein (496aa)
betaine aldehyde dehydrogenase (EC:1.2.1.8)
Betaine-aldehyde dehydrogenase {ECO:0000313|EMBL:ACX97181.1}; EC=1.2.1.8 {ECO:0000313|EMBL:ACX97181.1};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Betaine-aldehyde dehydrogenase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KX61_HALNC
RTP_11222018_0_1um_scaffold_1003_13
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12956..14242
DNA (1287bp) protein (429aa)
4-aminobutyrate aminotransferase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KX60_HALNC
4-aminobutyrate aminotransferase
4-aminobutyrate aminotransferase {ECO:0000313|EMBL:ACX97180.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
RTP_11222018_0_1um_scaffold_1003_14

Not on your lists

comp(14600..15343)
DNA (744bp) protein (248aa)
Putative outer membrane protein OmpA (Modular protein) n=1 Tax=mine drainage metagenome RepID=E6QPU7_9ZZZZ
Putative outer membrane protein OmpA (Modular protein) {ECO:0000313|EMBL:CBI09268.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_1003_15
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15774..16457
DNA (684bp) protein (228aa)
Transcriptional regulator, GntR family n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KX54_HALNC
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ACX97174.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
RTP_11222018_0_1um_scaffold_1003_16
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16782..17132
DNA (351bp) protein (117aa)
Succinate dehydrogenase, hydrophobic membrane anchor protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KX52_HALNC
succinate dehydrogenase, hydrophobic membrane anchor protein
Succinate dehydrogenase, hydrophobic membrane anchor protein {ECO:0000313|EMBL:ACX97172.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
RTP_11222018_0_1um_scaffold_1003_17
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17129..18892
DNA (1764bp) protein (588aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KX51_HALNC
succinate dehydrogenase or fumarate reductase, flavoprotein subunit
RTP_11222018_0_1um_scaffold_1003_18
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18902..19330
DNA (429bp) protein (143aa)
succinate dehydrogenase and fumarate reductase iron-sulfur protein (EC:1.3.99.1)
Succinate dehydrogenase and fumarate reductase iron-sulfur protein {ECO:0000313|EMBL:ACX97170.1}; EC=1.3.99.1 {ECO:0000313|EMBL:ACX97170.1};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Succinate dehydrogenase and fumarate reductase iron-sulfur protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KX50_HALNC
RTP_11222018_0_1um_scaffold_1003_19
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19472..19747
DNA (276bp) protein (92aa)
Putative uncharacterized protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KX49_HALNC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX97169.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
RTP_11222018_0_1um_scaffold_1003_20
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19740..20831
DNA (1092bp) protein (364aa)
Putative ATPase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AGZ2_9PROT
putative ATPase
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
RTP_11222018_0_1um_scaffold_1003_21
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20896..22224)
DNA (1329bp) protein (443aa)
Transposase, IS204/IS1001/IS1096/IS1165 family protein n=1 Tax=mine drainage metagenome RepID=T1CXY6_9ZZZZ
transposase family protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
RTP_11222018_0_1um_scaffold_1003_22
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22326..22856)
DNA (531bp) protein (177aa)
Uncharacterized protein n=3 Tax=Azotobacter vinelandii RepID=M9XX41_AZOVI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACO81114.1}; TaxID=322710 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii (strain DJ / ATCC BAA-1303).;"
RTP_11222018_0_1um_scaffold_1003_23
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22853..23146)
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI0003734B02
Predicted nucleotidyltransferases {ECO:0000313|EMBL:CDS54614.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
DNA polymerase, beta-like region-containing protein
RTP_11222018_0_1um_scaffold_1003_24

Not on your lists

23502..24311
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QU34_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10756.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
transcriptional regulator
Displaying 24 items

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