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RTP_11222018_0_1um_scaffold_1204

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_1204_1
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1058
DNA (1056bp) protein (352aa)
phosphomethylpyrimidine synthase ThiC n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034C6DD9
thiamine biosynthesis protein ThiC
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_11222018_0_1um_scaffold_1204_2
GWA2_Gallionellales_59_43_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1216..2046
DNA (831bp) protein (277aa)
UDP pyrophosphate phosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase n=2 Tax=Thauera RepID=C4KC76_THASP
Tax=GWA2_Gallionellales_59_43_curated
RTP_11222018_0_1um_scaffold_1204_3
RIFOXYD2_FULL_Sideroxydans_59_7_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2118..3692)
DNA (1575bp) protein (525aa)
Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CRF2_SIDLE
response regulator receiver modulated metal dependent phosphohydrolase
Tax=RIFOXYD2_FULL_Sideroxydans_59_7_curated
RTP_11222018_0_1um_scaffold_1204_4
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3883..5190)
DNA (1308bp) protein (436aa)
ATPase AAA n=1 Tax=Uliginosibacterium gangwonense RepID=UPI00036933BB
recombination factor protein RarA
Uncharacterized conserved protein {ECO:0000313|EMBL:ABR89459.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
RTP_11222018_0_1um_scaffold_1204_5

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comp(5187..5810)
DNA (624bp) protein (208aa)
Outer-membrane lipoprotein carrier protein n=1 Tax=mine drainage metagenome RepID=E6QTR1_9ZZZZ
Outer-membrane lipoprotein carrier protein {ECO:0000313|EMBL:CBI10633.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
outer membrane lipoprotein carrier protein LolA
RTP_11222018_0_1um_scaffold_1204_6

Not on your lists

comp(5803..8085)
DNA (2283bp) protein (761aa)
Putative DNA translocase ftsK n=1 Tax=mine drainage metagenome RepID=E6QTR2_9ZZZZ
Putative DNA translocase ftsK {ECO:0000313|EMBL:CBI10634.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
cell division FtsK/SpoIIIE
RTP_11222018_0_1um_scaffold_1204_7

Not on your lists

8188..9144
DNA (957bp) protein (319aa)
Thioredoxin reductase (TRXR) {ECO:0000313|EMBL:CBI10635.1}; EC=1.8.1.9 {ECO:0000313|EMBL:CBI10635.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
thioredoxin reductase (EC:1.8.1.9)
Thioredoxin reductase id=1348793 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
RTP_11222018_0_1um_scaffold_1204_8
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9150..9707
DNA (558bp) protein (186aa)
DNA mismatch repair protein MutS n=1 Tax=Methylophilus RepID=UPI00036E1938
Smr protein/MutS2 (modular protein)
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
RTP_11222018_0_1um_scaffold_1204_9
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9720..10166
DNA (447bp) protein (149aa)
bcp; bacterioferritin comigratory oxidoreductase (EC:1.11.1.-)
Bacterioferritin comigratory oxidoreductase protein {ECO:0000313|EMBL:ADJ63583.1}; EC=1.11.1.- {ECO:0000313|EMBL:ADJ63583.1};; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
peroxiredoxin n=1 Tax=Herbaspirillum seropedicae RepID=UPI00035C8286
RTP_11222018_0_1um_scaffold_1204_10

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10178..11578
DNA (1401bp) protein (467aa)
Putative Phosphate starvation-inducible protein PhoH-like n=1 Tax=mine drainage metagenome RepID=E6QTR6_9ZZZZ
Putative Phosphate starvation-inducible protein PhoH-like {ECO:0000313|EMBL:CBI10638.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
nucleotide binding protein
RTP_11222018_0_1um_scaffold_1204_11
Chromobacterium violaceum, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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11575..12012
DNA (438bp) protein (146aa)
Probable ribonuclease n=1 Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=Q7NYS1_CHRVO
Ribonuclease {ECO:0000313|EMBL:KJH67544.1}; TaxID=536 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium violaceum.;"
ribonuclease
RTP_11222018_0_1um_scaffold_1204_12

Not on your lists

12009..12281
DNA (273bp) protein (91aa)
Putative ribonuclease inhibitor n=1 Tax=mine drainage metagenome RepID=E6QTR7_9ZZZZ
Putative ribonuclease inhibitor {ECO:0000313|EMBL:CBI10639.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
barnase inhibitor barstar
RTP_11222018_0_1um_scaffold_1204_13
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12711..14111
DNA (1401bp) protein (467aa)
aromatic-L-amino-acid decarboxylase (EC:4.1.1.28)
Aromatic-L-amino-acid decarboxylase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AA93_9PROT
Cytochrome D ubiquinol oxidase subunit I {ECO:0000313|EMBL:GAO35722.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
RTP_11222018_0_1um_scaffold_1204_14

Not on your lists

14101..15339
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QR62_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09733.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_1204_15

Not on your lists

15339..16139
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QR63_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09734.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_1204_16

Not on your lists

16198..16677
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QR63_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09734.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_1204_17
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16744..17877)
DNA (1134bp) protein (378aa)
Ammonium transporter n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CQT7_SIDLE
ammonium transporter
Ammonia channel {ECO:0000313|EMBL:GAO32982.1}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
RTP_11222018_0_1um_scaffold_1204_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18030..18821)
DNA (792bp) protein (264aa)
Sec-independent protein translocase protein TatC n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI73_THIDA
Sec-independent protein translocase TatC
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_11222018_0_1um_scaffold_1204_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18808..19218)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000374C262
twin-arginine translocation protein TatB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_11222018_0_1um_scaffold_1204_20
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19231..19449)
DNA (219bp) protein (73aa)
Sec-independent protein translocase protein TatA n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B165_9PROT
twin arginine-targeting protein translocase, TatA/E family
Tax=CG_Beta_01
RTP_11222018_0_1um_scaffold_1204_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19459..19797)
DNA (339bp) protein (113aa)
HIT family protein; K02503 Hit-like protein involved in cell-cycle regulation id=12493544 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
HIT family protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_1204_22
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19794..20120)
DNA (327bp) protein (109aa)
Phosphoribosyl-ATP pyrophosphatase n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DLL3_METS0
phosphoribosyl-ATP diphosphatase
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_11222018_0_1um_scaffold_1204_23
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20117..20512)
DNA (396bp) protein (132aa)
hisI; phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19)
Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AIR8_9PROT
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_11222018_0_1um_scaffold_1204_24
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20509..21270)
DNA (762bp) protein (254aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3XCD3_OXAFO
imidazoleglycerol phosphate synthase, cyclase subunit
RTP_11222018_0_1um_scaffold_1204_25
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21271..22014)
DNA (744bp) protein (248aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Methylophilus methylotrophus RepID=UPI0003605711
hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
RTP_11222018_0_1um_scaffold_1204_26
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22039..22728)
DNA (690bp) protein (230aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
imidazole glycerol phosphate synthase subunit HisH (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH id=1333508 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
RTP_11222018_0_1um_scaffold_1204_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22730..23317)
DNA (588bp) protein (196aa)
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19); K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] id=12493550 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_1204_28
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23323..24396)
DNA (1074bp) protein (358aa)
hisC; histidinol-phosphate aminotransferase (EC:2.6.1.9)
histidinol-phosphate aminotransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CD7CB
Tax=CG_Beta_01
RTP_11222018_0_1um_scaffold_1204_29

Not on your lists

comp(24399..25538)
DNA (1140bp) protein (380aa)
Histidinol dehydrogenase (HDH) {ECO:0000313|EMBL:CBI10038.1}; EC=1.1.1.23 {ECO:0000313|EMBL:CBI10038.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hisD; histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase (HDH) n=1 Tax=mine drainage metagenome RepID=E6QS16_9ZZZZ
Displaying 29 items

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