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RTP_11222018_0_1um_scaffold_1502

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_1502_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3..671
DNA (669bp) protein (223aa)
thiol:disulfide interchange protein DsbD (EC:1.8.1.8)
Thiol:disulfide interchange protein DsbD n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFU4_THIDA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_1502_2
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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737..1126
DNA (390bp) protein (130aa)
Thioredoxin n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B845_9PROT
thioredoxin
Thioredoxin {ECO:0000313|EMBL:BAN36587.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_11222018_0_1um_scaffold_1502_3
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1196..1687
DNA (492bp) protein (164aa)
3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10] id=12495864 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
aroQ; 3-dehydroquinate dehydratase
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_11222018_0_1um_scaffold_1502_4
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1668..2123
DNA (456bp) protein (152aa)
acetyl-CoA carboxylase n=1 Tax=Chitiniphilus shinanonensis RepID=UPI000382D3CE
biotin carboxyl carrier protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_11222018_0_1um_scaffold_1502_5

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2148..3500
DNA (1353bp) protein (451aa)
Biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC) {ECO:0000313|EMBL:CBI10133.1}; EC=6.3.4.14 {ECO:0000313|EMBL:CBI10133.1};; EC=6.4.1.2 {ECO:0000313|EMBL:CBI10133.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
accC; acetyl-CoA carboxylase, biotin carboxylase (EC:6.4.1.2)
Biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC) n=1 Tax=mine drainage metagenome RepID=E6QSB1_9ZZZZ
RTP_11222018_0_1um_scaffold_1502_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3509..4396
DNA (888bp) protein (296aa)
prmA; ribosomal protein L11 methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase {ECO:0000255|HAMAP-Rule:MF_00735}; Short=L11 Mtase {ECO:0000255|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000255|HAMAP-Rule:MF_00735};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Ribosomal protein L11 methyltransferase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=PRMA_THIDA
RTP_11222018_0_1um_scaffold_1502_7
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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4396..5289
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Methylophilus methylotrophus RepID=UPI000370BD76
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
RTP_11222018_0_1um_scaffold_1502_8
CG_Gallio_01, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5354..5776)
DNA (423bp) protein (141aa)
Membrane-bound ATP synthase, F1 sector,epsilon-subunit n=1 Tax=mine drainage metagenome RepID=E6QSB4_9ZZZZ
ATP synthase F1 subunit epsilon
Tax=CG_Gallio_01
RTP_11222018_0_1um_scaffold_1502_9

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comp(5836..7215)
DNA (1380bp) protein (460aa)
F1 sector of membrane-bound ATP synthase, beta subunit {ECO:0000313|EMBL:CBI10137.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CBI10137.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ATP synthase F1 subunit beta (EC:3.6.3.14)
F1 sector of membrane-bound ATP synthase, beta subunit n=1 Tax=mine drainage metagenome RepID=E6QSB5_9ZZZZ
RTP_11222018_0_1um_scaffold_1502_10

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comp(7240..8103)
DNA (864bp) protein (288aa)
ATP synthase gamma chain (ATP synthase F1 sector gamma subunit) {ECO:0000313|EMBL:CBI10138.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CBI10138.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ATP synthase F0F1 subunit gamma (EC:3.6.3.14)
ATP synthase gamma chain (ATP synthase F1 sector gamma subunit) n=1 Tax=mine drainage metagenome RepID=E6QSB6_9ZZZZ
RTP_11222018_0_1um_scaffold_1502_11

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comp(8117..9658)
DNA (1542bp) protein (514aa)
Membrane-bound ATP synthase, F1 sector,alpha-subunit {ECO:0000313|EMBL:CBI10140.1}; EC=3.6.3.15 {ECO:0000313|EMBL:CBI10140.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Membrane-bound ATP synthase, F1 sector,alpha-subunit n=1 Tax=mine drainage metagenome RepID=E6QSB8_9ZZZZ
atpF1A; F0F1 ATP synthase subunit alpha
RTP_11222018_0_1um_scaffold_1502_12
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9684..10220)
DNA (537bp) protein (179aa)
ATP synthase subunit delta n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK73_9PROT
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
ATP synthase F1 subunit delta
RTP_11222018_0_1um_scaffold_1502_13
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10223..10693)
DNA (471bp) protein (157aa)
F-type H+-transporting ATP synthase subunit B (EC:3.6.3.14)
ATP synthase subunit b n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ADZ2_9PROT
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_11222018_0_1um_scaffold_1502_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10723..10962)
DNA (240bp) protein (80aa)
ATP synthase F0F1 subunit C (EC:3.6.3.14)
F0F1 ATP synthase subunit C (EC:3.6.3.14); K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14] id=12494013 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying 14 items

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