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RTP_11222018_0_1um_scaffold_1507

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_1507_1
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..224
DNA (222bp) protein (74aa)
Diaminopimelate epimerase (DAP epimerase) n=1 Tax=mine drainage metagenome RepID=E6QSC7_9ZZZZ
diaminopimelate epimerase
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
RTP_11222018_0_1um_scaffold_1507_2

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228..866
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QSC6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10148.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_1507_3

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863..1732
DNA (870bp) protein (290aa)
Tyrosine recombinase xerC n=1 Tax=mine drainage metagenome RepID=E6QSC5_9ZZZZ
Tyrosine recombinase xerC {ECO:0000313|EMBL:CBI10147.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
tyrosine recombinase XerC
RTP_11222018_0_1um_scaffold_1507_4
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1813..2262)
DNA (450bp) protein (150aa)
50S ribosomal protein L9 n=2 Tax=Methylovorus RepID=C6XDQ1_METSD
rplI; 50S ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
RTP_11222018_0_1um_scaffold_1507_5

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comp(2272..2544)
DNA (273bp) protein (91aa)
Putative 30S ribosomal protein S18 RpsR n=1 Tax=mine drainage metagenome RepID=E6QSQ5_9ZZZZ
Putative 30S ribosomal protein S18 RpsR {ECO:0000313|EMBL:CBI10277.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
30S ribosomal protein S18
RTP_11222018_0_1um_scaffold_1507_6
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2860..3237)
DNA (378bp) protein (126aa)
30S ribosomal protein S6 n=1 Tax=Uliginosibacterium gangwonense RepID=UPI000381D355
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
rpsF; 30S ribosomal protein S6
RTP_11222018_0_1um_scaffold_1507_7
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3320..4126)
DNA (807bp) protein (269aa)
anaerobic ribonucleoside triphosphate reductase n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000362D3E6
hypothetical protein
Tax=RBG_16_Gamma2_64_10_curated
RTP_11222018_0_1um_scaffold_1507_8
Photobacterium halotolerans, Photobacterium, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4264..5628)
DNA (1365bp) protein (455aa)
Putative uncharacterized protein n=2 Tax=sulfur-oxidizing symbionts RepID=G2DFJ7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKD00238.1}; TaxID=265726 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.;" source="Photobacterium halotolerans.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_1507_9
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(5888..6334)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WE51_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ18665.1}; Flags: Precursor;; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
RTP_11222018_0_1um_scaffold_1507_10

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comp(6539..7066)
DNA (528bp) protein (176aa)
Putative Acid phosphatase/vanadium-dependent haloperoxidase n=1 Tax=mine drainage metagenome RepID=E6QSR5_9ZZZZ
Putative Acid phosphatase/vanadium-dependent haloperoxidase {ECO:0000313|EMBL:CBI10287.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
PA-phosphatase-like phosphoesterase
RTP_11222018_0_1um_scaffold_1507_11

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comp(7035..8252)
DNA (1218bp) protein (406aa)
Putative glycosyl transferase {ECO:0000313|EMBL:CBI10286.1}; EC=2.4.1.- {ECO:0000313|EMBL:CBI10286.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Putative glycosyl transferase n=1 Tax=mine drainage metagenome RepID=E6QSR4_9ZZZZ
glycosyltransferase
RTP_11222018_0_1um_scaffold_1507_12

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8348..10537
DNA (2190bp) protein (730aa)
Putative Primosomal protein N n=1 Tax=mine drainage metagenome RepID=E6QSR3_9ZZZZ
Putative Primosomal protein N {ECO:0000313|EMBL:CBI10285.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
primosomal protein N'
RTP_11222018_0_1um_scaffold_1507_13
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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10801..11295
DNA (495bp) protein (165aa)
short-chain dehydrogenase n=1 Tax=Dickeya zeae RepID=UPI0002D4EE43
short-chain dehydrogenase
Tax=BJP_S1_SUB10_Methylophilales_55_32
RTP_11222018_0_1um_scaffold_1507_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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11452..12279
DNA (828bp) protein (276aa)
UPI00039B95DB related cluster n=1 Tax=unknown RepID=UPI00039B95DB
methylated-DNA--protein-cysteine methyltransferase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_1507_15

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comp(12465..13280)
DNA (816bp) protein (272aa)
DNA gyrase subunit B {ECO:0000313|EMBL:CBI10990.1}; EC=5.99.1.3 {ECO:0000313|EMBL:CBI10990.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=mine drainage metagenome RepID=E6QUR7_9ZZZZ
Displaying 15 items

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