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RTP_11222018_0_1um_scaffold_915_4

Organism: RTP_11222018_0_1um_Betaproteobacteria_47_59

near complete RP 50 / 55 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: comp(2948..3253)

Top 3 Functional Annotations

Value Algorithm Source
triple helix repeat-containing collagen id=5079085 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD similarity UNIREF
DB: UNIREF100
  • Identity: 57.0
  • Coverage: 121.0
  • Bit_score: 114
  • Evalue 4.70e-23
triple helix repeat-containing collagen similarity KEGG
DB: KEGG
  • Identity: 51.2
  • Coverage: 129.0
  • Bit_score: 103
  • Evalue 2.30e-20
Tax=BJP_08E140C01_Burkholderiales_65_30 similarity UNIPROT
DB: UniProtKB
  • Identity: 58.5
  • Coverage: 118.0
  • Bit_score: 116
  • Evalue 1.70e-23

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Taxonomy

BJP_08E140C01_Burkholderiales_65_30 → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 306
ATGAAATACTCAACACTACTTTTAGCACTGTTAGCAGCACTCGGTTTAAGCGCTTGTGACCGCCCGACTGTCGTTAATACCCCAGCAACAGCTGTTGCTGTACCTGTTGCTGTACCTGTAAACGTACCTGGCCCAGCCGGTCCTGCAGGCGCAACGGGCGCAACTGGCGCTACCGGCAATATGGGTTACGACGGTTCCAAAGGCGATACAGGACAAACTGGTCAAACAGGTCAAACAGGCCAAACTGGTGCTCGAGGTAATACTGGCGGCGATACCATTGTAGTTGTTCCAGCACCCGCGCAATAA
PROTEIN sequence
Length: 102
MKYSTLLLALLAALGLSACDRPTVVNTPATAVAVPVAVPVNVPGPAGPAGATGATGATGNMGYDGSKGDTGQTGQTGQTGQTGARGNTGGDTIVVVPAPAQ*