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RTP_11222018_0_1um_scaffold_915

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_915_1
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..613)
DNA (612bp) protein (204aa)
Catalase {ECO:0000256|RuleBase:RU000498, ECO:0000313|EMBL:AJP49238.1}; EC=1.11.1.6 {ECO:0000256|RuleBase:RU000498};; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
Catalase n=7 Tax=Pelosinus fermentans RepID=I8RUQ6_9FIRM
catalase
RTP_11222018_0_1um_scaffold_915_2
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(916..2214)
DNA (1299bp) protein (433aa)
Sodium/hydrogen exchanger n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21YM3_RHOFD
sodium/hydrogen exchanger
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
RTP_11222018_0_1um_scaffold_915_3

Not on your lists

comp(2564..2890)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QU67_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10789.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_915_4
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2948..3253)
DNA (306bp) protein (102aa)
triple helix repeat-containing collagen id=5079085 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
triple helix repeat-containing collagen
Tax=BJP_08E140C01_Burkholderiales_65_30
RTP_11222018_0_1um_scaffold_915_5
unknown

Not on your lists

comp(3571..3711)
DNA (141bp) protein (47aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_915_6
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4211..5518)
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AJ35_9PROT
hypothetical protein
Tax=RBG_16_Gallionellales_56_9_curated
RTP_11222018_0_1um_scaffold_915_7
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5555..7042)
DNA (1488bp) protein (496aa)
cardiolipin synthetase 2 (EC:2.7.8.-)
Phospholipase D/Transphosphatidylase id=1312390 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RBG_16_Gallionellales_56_9_curated
RTP_11222018_0_1um_scaffold_915_8
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7174..8289)
DNA (1116bp) protein (372aa)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IVP3_9GAMM
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:EGW21780.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
PAS/PAC sensor hybrid histidine kinase
RTP_11222018_0_1um_scaffold_915_9
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8317..9777)
DNA (1461bp) protein (487aa)
Circadian clock protein KaiC n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHV1_9PROT
protein kinase
Protein kinase {ECO:0000313|EMBL:AJP49226.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
RTP_11222018_0_1um_scaffold_915_10
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9770..10192)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T0YWV9_9ZZZZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP49227.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
RTP_11222018_0_1um_scaffold_915_11
unknown

Not on your lists

comp(10209..10355)
DNA (147bp) protein (49aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_915_12
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10567..19155)
DNA (8589bp) protein (2863aa)
hypothetical protein id=15194138 bin=GWC2_NOV_55_46 species=Nitrosomonas sp. AL212 genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
RTP_11222018_0_1um_scaffold_915_13
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19365..19733)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G813_HERAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL62650.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
RTP_11222018_0_1um_scaffold_915_14
Desulfobulbaceae bacterium BRH_c16a, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20037..22127)
DNA (2091bp) protein (697aa)
GGDEF family protein n=1 Tax=uncultured bacterium BLR9 RepID=C0INC4_9BACT
Diguanylate cyclase {ECO:0000313|EMBL:KJS00853.1}; TaxID=1629713 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae.;" source="Desulfobulbaceae bacterium BRH_c16a.;"
response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
RTP_11222018_0_1um_scaffold_915_15
RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22613..23788)
DNA (1176bp) protein (392aa)
Filamentation induced by cAMP protein Fic n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LNI7_DESBD
filamentation induced by cAMP protein fic
Tax=RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated
RTP_11222018_0_1um_scaffold_915_trna_3
unknown

Not on your lists

comp(24139..24211)
DNA (73bp)
transferRNA His
RTP_11222018_0_1um_scaffold_915_trna_2
unknown

Not on your lists

comp(24229..24302)
DNA (74bp)
transferRNA Arg
RTP_11222018_0_1um_scaffold_915_16
unknown

Not on your lists

24351..24530
DNA (180bp) protein (60aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_915_trna_1
unknown

Not on your lists

comp(24368..24441)
DNA (74bp)
transferRNA Pro
RTP_11222018_0_1um_scaffold_915_17

Not on your lists

24574..25443
DNA (870bp) protein (290aa)
Bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase and 5,10-methylene-tetrahydrofolate cyclohydrolase {ECO:0000313|EMBL:CBI09512.1}; EC=1.5.1.5 {ECO:0000313|EMBL:CBI09512.1};; EC=3.5.4.9 {ECO:0000313|EMBL:CBI09512.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase and 5,10-methylene-tetrahydrofolate cyclohydrolase n=1 Tax=mine drainage metagenome RepID=E6QQJ1_9ZZZZ
methenyltetrahydrofolate cyclohydrolase
RTP_11222018_0_1um_scaffold_915_18
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25492..26868)
DNA (1377bp) protein (459aa)
Adenylosuccinate lyase n=1 Tax=mine drainage metagenome RepID=E6QQJ3_9ZZZZ
Adenylosuccinate lyase {ECO:0000313|EMBL:GAO35327.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
purB; adenylosuccinate lyase
RTP_11222018_0_1um_scaffold_915_19

Not on your lists

27013..27486
DNA (474bp) protein (158aa)
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:CBI10502.1}; EC=3.6.1.- {ECO:0000313|EMBL:CBI10502.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ATP-dependent DNA helicase RecQ n=1 Tax=mine drainage metagenome RepID=E6QTD0_9ZZZZ
ATP-dependent DNA helicase RecQ
Displaying 22 items

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