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SR-VP_26_10_2019_2_100cm_scaffold_1963

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_2_100cm_scaffold_1963_1
unknown

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comp(1..210)
DNA (210bp) protein (70aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_1963_2
RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(353..1102)
DNA (750bp) protein (250aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
SR-VP_26_10_2019_2_100cm_scaffold_1963_3

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comp(1156..1380)
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI00037ABAA6
YcfA family protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
SR-VP_26_10_2019_2_100cm_scaffold_1963_4

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comp(1383..1592)
DNA (210bp) protein (70aa)
Uncharacterized protein family UPF0150 n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JN17_9GAMM
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
SR-VP_26_10_2019_2_100cm_scaffold_1963_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(1686..2159)
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037D4B40
Esterase/lipase {ECO:0000313|EMBL:CDM64870.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
alpha/beta hydrolase domain-containing protein
SR-VP_26_10_2019_2_100cm_scaffold_1963_6
unknown

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2554..3654
DNA (1101bp) protein (367aa)
NMT1/THI5 like domain protein n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RZI1_FERPA
NMT1/THI5 like domain protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1963_7
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3654..4460
DNA (807bp) protein (269aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BDS7_9EURY
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_1963_8
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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4448..5209
DNA (762bp) protein (254aa)
ABC transporter related protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XNW5_METZD
ABC transporter
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_1963_9
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(5227..5721)
DNA (495bp) protein (165aa)
hypothetical protein id=14430833 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_1963_10
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(5745..6971)
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TP66_METAC
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_1963_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(7116..10499)
DNA (3384bp) protein (1128aa)
Signal transduction histidine kinase {ECO:0000313|EMBL:KCZ73158.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Histidine kinase,HAMP domain-containing protein,histidine kinase,cache domain-containing protein,GAF domain-containing protein id=3112752 bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium sp. WSM1253 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative two-component sensor histidine kinase
SR-VP_26_10_2019_2_100cm_scaffold_1963_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10496..10861)
DNA (366bp) protein (122aa)
UPI0003D1B816 related cluster n=1 Tax=unknown RepID=UPI0003D1B816
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:KCZ71969.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
response regulator receiver
SR-VP_26_10_2019_2_100cm_scaffold_1963_13
unknown

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comp(10854..11201)
DNA (348bp) protein (116aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1963_14
unknown

Not on your lists

comp(11215..11472)
DNA (258bp) protein (86aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1963_15
unknown

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comp(11499..12983)
DNA (1485bp) protein (495aa)
putative circadian clock protein KaiC (EC:2.7.11.1)
Putative circadian clock protein, KaiC n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XNP2_METZD
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1963_16
unknown

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comp(13350..14114)
DNA (765bp) protein (255aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B630_METTP
xylose isomerase domain-containing protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_1963_17
unknown

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14453..14608
DNA (156bp) protein (52aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_1963_18
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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14643..17675
DNA (3033bp) protein (1011aa)
Type I restriction-modification system, M subunit, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZMF6_9BACT
Type I restriction-modification system, M subunit, putative {ECO:0000313|EMBL:EAY28336.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
type I restriction-modification system, M subunit
SR-VP_26_10_2019_2_100cm_scaffold_1963_19
Prevotella buccalis, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17748..18356
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W746_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EFA91594.1}; TaxID=679190 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella buccalis ATCC 35310.;"
SR-VP_26_10_2019_2_100cm_scaffold_1963_20
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

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18510..19661
DNA (1152bp) protein (384aa)
major facilitator superfamily protein id=16847089 bin=RBG_16_Aminicenantes_63_16_plus species=Alistipes onderdonkii genus=Alistipes taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
major facilitator superfamily protein
Tax=RBG_16_Aminicenantes_63_16_curated
SR-VP_26_10_2019_2_100cm_scaffold_1963_21
RBG_16_Desulfobacca_60_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19624..20583)
DNA (960bp) protein (320aa)
glucokinase (EC:2.7.1.2)
Glucokinase n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NH75_DESAR
Tax=RBG_16_Desulfobacca_60_12_curated
SR-VP_26_10_2019_2_100cm_scaffold_1963_22
RBG_16_Desulfobacca_60_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20580..21329)
DNA (750bp) protein (250aa)
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NH76_DESAR
Sua5/YciO/YrdC/YwlC family protein
Tax=RBG_16_Desulfobacca_60_12_curated
SR-VP_26_10_2019_2_100cm_scaffold_1963_23
RBG_16_Desulfobacca_60_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21877..22647
DNA (771bp) protein (257aa)
Family 3 adenylate cyclase id=4806711 bin=GWC2_Syntrophobacterales_56_13 species=Desulfovibrio magneticus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
adenylate/guanylate cyclase with Chase sensor
Tax=RBG_16_Desulfobacca_60_12_curated
Displaying 23 items

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