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SR-VP_26_10_2019_2_100cm_scaffold_5628

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_2_100cm_scaffold_5628_1
unknown

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2..220
DNA (219bp) protein (73aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_5628_2
unknown

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comp(147..536)
DNA (390bp) protein (130aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_5628_3
unknown

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comp(626..2095)
DNA (1470bp) protein (490aa)
IMP cyclohydrolase ;phosphoribosylaminoimidazolecarboxamide formyltransferase (EC:3.5.4.10 2.1.2.3)
IMP cyclohydrolase ;phosphoribosylaminoimidazolecarboxamide formyltransferase n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E926_METMS
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_5628_4
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2384..4105)
DNA (1722bp) protein (574aa)
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01518}; Short=Adenase {ECO:0000256|HAMAP-Rule:MF_01518};; Short=Adenine aminase {ECO:0000256|HAMAP-Rule:MF_01518};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01518};; TaxID=1434104 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides methylutens MM1.;"
adenine deaminase (EC:3.5.4.2)
Adenine deaminase n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=ADEC_METBU
SR-VP_26_10_2019_2_100cm_scaffold_5628_5
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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4207..4872
DNA (666bp) protein (222aa)
Xanthine-guanine phosphoribosyltransferase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TQ65_METAC
gptA; xanthine-guanine phosphoribosyltransferase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_5628_6
unknown

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comp(4922..5350)
DNA (429bp) protein (143aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_5628_trna_1
unknown

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5407..5479
DNA (73bp)
transferRNA Asp
SR-VP_26_10_2019_2_100cm_scaffold_5628_7
unknown

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5431..6057
DNA (627bp) protein (209aa)
Glr3535 protein id=4282168 bin=GWF2_OP3_43_52 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
metal dependent hydrolase
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_5628_8
unknown

Not on your lists

6265..7530
DNA (1266bp) protein (422aa)
glutamate-1-semialdehyde aminotransferase (EC:5.4.3.8)
UPI0003D1BB3D related cluster n=1 Tax=unknown RepID=UPI0003D1BB3D
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_5628_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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7527..8513
DNA (987bp) protein (329aa)
Probable porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hemC; porphobilinogen deaminase (EC:2.5.1.61)
Probable porphobilinogen deaminase n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=HEM3_METBU
SR-VP_26_10_2019_2_100cm_scaffold_5628_10
unknown

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8473..9210
DNA (738bp) protein (246aa)
Uroporphyrin-III C-methyltransferase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KX65_METHD
uroporphyrin-III C-methyltransferase
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_5628_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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9218..9988
DNA (771bp) protein (257aa)
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:KCZ72558.1}; EC=4.2.1.75 {ECO:0000313|EMBL:KCZ72558.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Uroporphyrinogen III synthase HEM4 n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E6K9_METEZ
uroporphyrinogen III synthase HEM4
SR-VP_26_10_2019_2_100cm_scaffold_5628_12
unknown

Not on your lists

10041..10688
DNA (648bp) protein (216aa)
UPF0313 protein MCON_1402 n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BSW2_METCG
Radical SAM N-terminal domain-containing protein
Tax=RBG_16_Euryarchaeota_41_19_curated
Displaying 13 items

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