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SR-VP_26_10_2020_1_100CM_scaffold_3544028

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2020_1_100CM_scaffold_3544028_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1..411)
DNA (411bp) protein (137aa)
gatD; glutamyl-tRNA(Gln) amidotransferase subunit D
Glutamyl-tRNA(Gln) amidotransferase subunit D n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BYR4_METCG
Glutamyl-tRNA(Gln) amidotransferase subunit D {ECO:0000256|HAMAP-Rule:MF_00586, ECO:0000256|RuleBase:RU004457}; Short=Glu-ADT subunit D {ECO:0000256|HAMAP-Rule:MF_00586};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00586, ECO:0000256|RuleBase:RU004457};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_3544028_2
unknown

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comp(420..1382)
DNA (963bp) protein (321aa)
farnesyltranstransferase (EC:2.5.1.29)
Farnesyltranstransferase n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XLQ9_METZD
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_3544028_3
unknown

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comp(1379..2716)
DNA (1338bp) protein (446aa)
Putative Zn-dependent hydrolase in polyisoprenoid biosynthetic cluster
Metallo-beta-lactamase n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46CL5_METBF
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_3544028_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2800..3906)
DNA (1107bp) protein (369aa)
isopentenyl-diphosphate delta-isomerase (EC:5.3.3.2)
Isopentenyl-diphosphate delta-isomerase n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=IDI2_METBF
Isopentenyl-diphosphate delta-isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; Short=IPP isomerase {ECO:0000256|HAMAP-Rule:MF_00354};; EC=5.3.3.2 {ECO:0000256|HAMAP-Rule:MF_00354};; Isopentenyl diphosphate:dimethylallyl diphosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; Isopentenyl pyrophosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; Type 2 isopentenyl diphosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_3544028_5
unknown

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comp(3939..4706)
DNA (768bp) protein (256aa)
aspartate/glutamate/uridylate kinase
Isopentenyl phosphate kinase n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12TH9_METBU
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_3544028_6
unknown

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comp(4703..5602)
DNA (900bp) protein (300aa)
mevalonate kinase (EC:2.7.1.36)
Mevalonate kinase n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12TI0_METBU
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_3544028_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(5599..6921)
DNA (1323bp) protein (441aa)
DEAD/DEAH box helicase
RNA helicase id=1817181 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
DNA/RNA helicase, superfamily II {ECO:0000313|EMBL:KCZ72021.1}; EC=3.6.4.13 {ECO:0000313|EMBL:KCZ72021.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_3544028_8
unknown

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7102..7323
DNA (222bp) protein (74aa)

This feature has no annotations

SR-VP_26_10_2020_1_100CM_scaffold_3544028_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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7326..8687
DNA (1362bp) protein (454aa)
dihydroorotase
Dihydroorotase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MCE5_9EURY
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_3544028_10
unknown

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8802..9512
DNA (711bp) protein (237aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W6A0_UNCMA
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_3544028_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(9643..13017)
DNA (3375bp) protein (1125aa)
two-component hybrid sensor and regulator
hypothetical protein n=1 Tax=Fischerella sp. PCC 9339 RepID=UPI00035F5E12
PAS domain S-box {ECO:0000313|EMBL:KCZ70644.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_3544028_12
unknown

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comp(13232..13705)
DNA (474bp) protein (158aa)

This feature has no annotations

SR-VP_26_10_2020_1_100CM_scaffold_3544028_13

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comp(14327..15598)
DNA (1272bp) protein (424aa)
hypothetical protein
cbd:CBUD_1502 hypothetical ATPase; K07133 id=86329 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
Uncharacterized protein {ECO:0000313|EMBL:EKD56362.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SR-VP_26_10_2020_1_100CM_scaffold_3544028_14
unknown

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15757..16602
DNA (846bp) protein (282aa)
pirin domain-containing protein
Pirin domain protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G737_GEOUR
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_3544028_15
RBG_16_OP11_Woesebacteria_34_12_curated, Woesebacteria, Microgenomates, Bacteria

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16695..17138
DNA (444bp) protein (148aa)
flavodoxin
Flavodoxin n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46AU0_METBF
Tax=RBG_16_OP11_Woesebacteria_34_12_curated
SR-VP_26_10_2020_1_100CM_scaffold_3544028_16
Methanoculleus marisnigri, Methanoculleus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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17143..17406
DNA (264bp) protein (88aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7LLH9_METBM
Uncharacterized protein {ECO:0000313|EMBL:ABN56429.1}; TaxID=368407 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanoculleus.;" source="Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1).;"
SR-VP_26_10_2020_1_100CM_scaffold_3544028_17
unknown

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comp(17434..18225)
DNA (792bp) protein (264aa)
Enoyl-CoA hydratase
Crotonase n=1 Tax=Caldanaerobacter subterraneus subsp. yonseiensis KB-1 RepID=U5CP10_THEYO
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_3544028_18

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comp(18194..19045)
DNA (852bp) protein (284aa)
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157)
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=planctomycete KSU-1 RepID=I3IJA5_9PLAN
Tax=RIFCSPHIGHO2_12_Planctomycetes_42_15_curated
Displaying 18 items

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