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SR-VP_26_10_2020_1_100CM_scaffold_2448362

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2020_1_100CM_scaffold_2448362_1
unknown

Not on your lists

comp(2..184)
DNA (183bp) protein (61aa)

This feature has no annotations

SR-VP_26_10_2020_1_100CM_scaffold_2448362_2
unknown

Not on your lists


988..1446
DNA (459bp) protein (153aa)
rps15p; 30S ribosomal protein S15
30S ribosomal protein S15 n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=RS15_METAC
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2448362_3
unknown

Not on your lists

1453..2787
DNA (1335bp) protein (445aa)
single-stranded DNA-specific exonuclease
Single-stranded DNA-specific exonuclease n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KY30_METHD
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2448362_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2771..3007
DNA (237bp) protein (79aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XNQ5_METZD
Uncharacterized protein {ECO:0000313|EMBL:KCZ72381.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_2448362_5
unknown

Not on your lists

3010..3465
DNA (456bp) protein (152aa)

This feature has no annotations

SR-VP_26_10_2020_1_100CM_scaffold_2448362_6
unknown

Not on your lists

3498..3656
DNA (159bp) protein (53aa)

This feature has no annotations

SR-VP_26_10_2020_1_100CM_scaffold_2448362_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(3705..4499)
DNA (795bp) protein (265aa)
hypothetical protein
UPI0003D1B0E0 related cluster n=1 Tax=unknown RepID=UPI0003D1B0E0
MEMO1 family protein ANME2D_01470 {ECO:0000256|HAMAP-Rule:MF_00055}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_2448362_8
unknown

Not on your lists


comp(4506..5132)
DNA (627bp) protein (209aa)
30S ribosomal protein S2P
30S ribosomal protein S2 n=1 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WLX6_METH6
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2448362_9
unknown

Not on your lists

comp(5151..5333)
DNA (183bp) protein (61aa)
rpoK; DNA-directed RNA polymerase subunit K (EC:2.7.7.6)
DNA-directed RNA polymerase subunit K n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KPR6_ARCVS
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2448362_trna_1
unknown

Not on your lists

comp(5470..5544)
DNA (75bp)
transferRNA Pro
SR-VP_26_10_2020_1_100CM_scaffold_2448362_10
unknown

Not on your lists


comp(5737..6135)
DNA (399bp) protein (133aa)
SSU ribosomal protein S9P
30S ribosomal protein S9 n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MC87_9EURY
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2448362_11
unknown

Not on your lists


comp(6139..6564)
DNA (426bp) protein (142aa)
50S ribosomal protein L13
50S ribosomal protein L13 n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XLP4_METZD
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2448362_12
unknown

Not on your lists


comp(6569..6931)
DNA (363bp) protein (121aa)
50S ribosomal protein L18e
50S ribosomal protein L18e n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IBF5_ACIB4
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2448362_13
unknown

Not on your lists

7183..7392
DNA (210bp) protein (70aa)

This feature has no annotations

SR-VP_26_10_2020_1_100CM_scaffold_2448362_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7605..7829
DNA (225bp) protein (75aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Halobacterium sp. DL1 RepID=G4IIC3_9EURY
Putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain {ECO:0000313|EMBL:KCZ71749.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_2448362_15
unknown

Not on your lists

7849..8997
DNA (1149bp) protein (383aa)
cell division protein FtsZ
Cell division protein FtsZ n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TJB2_METAC
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2448362_16
unknown

Not on your lists


comp(9235..9675)
DNA (441bp) protein (147aa)
rps6e; 30D ribosomal protein S6E
30S ribosomal protein S6e n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IAM3_METCZ
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2448362_17
unknown

Not on your lists

9928..10461
DNA (534bp) protein (178aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Probable deoxyuridine 5'-triphosphate nucleotidohydrolase n=2 Tax=Methanosarcina mazei RepID=DUT_METMA
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2448362_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10505..11155
DNA (651bp) protein (217aa)
type 12 methyltransferase
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B06 RepID=UPI0003774E0D
Methyltransferase family protein {ECO:0000313|EMBL:KCZ71958.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_2448362_19
unknown

Not on your lists

comp(11203..12252)
DNA (1050bp) protein (350aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TUE5_METAC
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2448362_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(12841..13413)
DNA (573bp) protein (191aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Methanocaldococcus vulcanius (strain ATCC 700851 / DSM 12094 / M7) RepID=C9RGH5_METVM
Replication restart DNA helicase PriA {ECO:0000313|EMBL:KCZ71141.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_2448362_21
unknown

Not on your lists

comp(13406..13735)
DNA (330bp) protein (110aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2448362_22
unknown

Not on your lists

comp(13728..14201)
DNA (474bp) protein (158aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2448362_23
unknown

Not on your lists

comp(14406..15287)
DNA (882bp) protein (294aa)
menaquinone biosynthesis protein
Radical SAM domain protein n=1 Tax=Desulfotomaculum nigrificans DSM 574 RepID=F0DMA8_9FIRM
Tax=RBG_16_Euryarchaeota_41_19_curated
Displaying 24 items

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