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SR-VP_26_10_2020_1_100CM_scaffold_3163803

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2020_1_100CM_scaffold_3163803_1
RIFOXYA1_FULL_Bacteriovorax_36_14_curated, Bacteroivoracaceae, Bdellovibrionia, Bdellovibrionota, Bacteria

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2..1252
DNA (1251bp) protein (417aa)
hypothetical protein
Genome sequencing data, contig C314 n=1 Tax=Microcystis aeruginosa PCC 7941 RepID=I4GLZ1_MICAE
Tax=RIFOXYA1_FULL_Bacteriovorax_36_14_curated
SR-VP_26_10_2020_1_100CM_scaffold_3163803_2
Methanosarcina sp. WWM596, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1255..2895
DNA (1641bp) protein (547aa)
Uncharacterized protein {ECO:0000313|EMBL:AKB20015.1}; TaxID=1434103 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. WWM596.;"
SR-VP_26_10_2020_1_100CM_scaffold_3163803_3
Thermococcus eurythermalis, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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comp(3339..3791)
DNA (453bp) protein (151aa)
twitching motility protein PilT
Nucleic acid-binding protein contains PIN domain n=1 Tax=Thermosphaera aggregans (strain DSM 11486 / M11TL) RepID=D5U333_THEAM
Thermococcus eurythermalis strain A501, complete genome {ECO:0000313|EMBL:AIU70797.1}; TaxID=1505907 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus eurythermalis.;"
SR-VP_26_10_2020_1_100CM_scaffold_3163803_4
unknown

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comp(3788..4009)
DNA (222bp) protein (74aa)

This feature has no annotations

SR-VP_26_10_2020_1_100CM_scaffold_3163803_5
unknown

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comp(4528..4866)
DNA (339bp) protein (113aa)
transcriptional modulator of MazE/toxin MazF
UPI0003D79F14 related cluster n=2 Tax=unclassified Aminicenantes RepID=UPI0003D79F14
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_3163803_6
unknown

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comp(4859..5161)
DNA (303bp) protein (101aa)
hypothetical protein
hypothetical protein n=1 Tax=unclassified Aminicenantes RepID=UPI000378BBA6
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_3163803_7
unknown

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comp(5266..7335)
DNA (2070bp) protein (690aa)
DNA mismatch repair protein MutS-like protein
DNA-binding protein MutS2 n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12WC4_METBU
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_3163803_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(7432..10227)
DNA (2796bp) protein (932aa)
carbamoyl-phosphate synthase, large subunit
Carbamoyl-phosphate synthase large chain n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KZB4_METHD
Carbamoyl-phosphate synthase large subunit {ECO:0000313|EMBL:KCZ70607.1}; EC=6.3.5.5 {ECO:0000313|EMBL:KCZ70607.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_3163803_9
unknown

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comp(10255..10632)
DNA (378bp) protein (126aa)
carB; carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I7L1_METCZ
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_3163803_10
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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10968..13280
DNA (2313bp) protein (771aa)
Type I restriction-modification system, restriction subunit R (EC:3.1.21.3)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-604-O16 RepID=UPI0003746771
Type I restriction-modification system, restriction subunit R {ECO:0000313|EMBL:AKB61951.1}; EC=3.1.21.3 {ECO:0000313|EMBL:AKB61951.1};; TaxID=1434115 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei SarPi.;"
SR-VP_26_10_2020_1_100CM_scaffold_3163803_11
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(13282..13728)
DNA (447bp) protein (149aa)
putative nucleic acid-binding protein, contains PIN domain
Putative nucleic acid-binding protein, contains PIN domain n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BLQ9_9EURY
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2020_1_100CM_scaffold_3163803_12
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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comp(13688..14089)
DNA (402bp) protein (134aa)
AbrB family transcriptional regulator
AbrB family transcriptional regulator n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZLW2_THELI
Tax=RBG_16_Thaumarchaeota_49_8_curated
SR-VP_26_10_2020_1_100CM_scaffold_3163803_13
Geoalkalibacter subterraneus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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14262..15707
DNA (1446bp) protein (482aa)
DNA methyltransferase
restriction endonuclease EcoEI subunit M n=1 Tax=Anabaena sp. PCC 7108 RepID=UPI00036E4832
DNA methyltransferase {ECO:0000313|EMBL:AJF06671.1}; TaxID=483547 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter subterraneus.;"
SR-VP_26_10_2020_1_100CM_scaffold_3163803_14
Chlorobaculum parvum, Chlorobaculum, Chlorobiales, Chlorobia, Chlorobi, Bacteria

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15704..17410
DNA (1707bp) protein (569aa)
restriction modification system DNA specificity domain
type I restriction endonuclease EcoAI subunit S n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B6E7C2
Restriction modification system DNA specificity domain {ECO:0000313|EMBL:ACF11369.1}; TaxID=517417 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobaculum.;" source="Chlorobaculum parvum (strain NCIB 8327) (Chlorobium vibrioforme subsp.; thiosulfatophilum (strain DSM 263 / NCIB 8327)).;"
SR-VP_26_10_2020_1_100CM_scaffold_3163803_15
RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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17460..17825
DNA (366bp) protein (122aa)
hepn domain-containing protein
Hepn domain, putative id=4219632 bin=GWF2_Syntrophobacterales_56_9 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_3163803_16
CG_Elusi_05, Elusimicrobia, Bacteria

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17807..18139
DNA (333bp) protein (111aa)
putative nucleotidyltransferase
DNA polymerase, beta-like region id=4476356 bin=GWC2_Syntrophobacterales_56_13 species=Methanoregula formicica genus=Methanoregula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=CG_Elusi_05
SR-VP_26_10_2020_1_100CM_scaffold_3163803_17
unknown

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18318..18449
DNA (132bp) protein (44aa)

This feature has no annotations

SR-VP_26_10_2020_1_100CM_scaffold_3163803_18
unknown

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comp(18451..18891)
DNA (441bp) protein (147aa)

This feature has no annotations

SR-VP_26_10_2020_1_100CM_scaffold_3163803_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

19146..19466
DNA (321bp) protein (107aa)
hypothetical protein
Uncharacterized protein n=2 Tax=Methanosarcina mazei RepID=M1PTN5_METMZ
Uncharacterized protein {ECO:0000313|EMBL:KCZ72792.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_3163803_20
Thermococcus nautili, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

19459..19809
DNA (351bp) protein (117aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=Q5JFZ2_THEKO
Uncharacterized protein {ECO:0000313|EMBL:AHL22737.1}; TaxID=195522 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus nautili.;"
SR-VP_26_10_2020_1_100CM_scaffold_3163803_21
unknown

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20224..20538
DNA (315bp) protein (105aa)
heat shock protein DnaJ-like protein
Heat shock protein DnaJ-like protein n=1 Tax=Methanolobus psychrophilus R15 RepID=K4M9K9_9EURY
Tax=RBG_16_Euryarchaeota_41_19_curated
Displaying 21 items

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