ggKbase home page

SR-VP_26_10_2020_1_100CM_scaffold_2618058

Search features with annotation key words

Displaying 24 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2020_1_100CM_scaffold_2618058_1
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..2770)
DNA (2769bp) protein (923aa)
putative Histidine kinase
Putative uncharacterized protein id=3140852 bin=GWC2_Syntrophus__56_31 species=uncultured delta proteobacterium genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
SR-VP_26_10_2020_1_100CM_scaffold_2618058_2
unknown

Not on your lists

comp(2763..2948)
DNA (186bp) protein (62aa)

This feature has no annotations

SR-VP_26_10_2020_1_100CM_scaffold_2618058_3
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(3575..4765)
DNA (1191bp) protein (397aa)
Heat shock protein 60 family chaperone GroEL
Thermosome subunit n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46DJ0_METBF
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2618058_4
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(4735..5190)
DNA (456bp) protein (152aa)
thermosome, chaperonin Cpn60/TCP-1
Thermosome subunit n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12U60_METBU
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2618058_5
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(5504..7600)
DNA (2097bp) protein (699aa)
hppA; membrane-bound proton-translocating pyrophosphatase
K(+)-insensitive pyrophosphate-energized proton pump n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MAU2_9EURY
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2618058_6
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(7915..9987)
DNA (2073bp) protein (691aa)
phosphoesterase domain-containing protein
Phosphoesterase, RecJ domain protein n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B987_METTP
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2618058_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10231..10389)
DNA (159bp) protein (53aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ71838.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_2618058_8
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(10535..12880)
DNA (2346bp) protein (782aa)
cob--com heterodisulfide reductase subunit a
CoB--CoM heterodisulfide reductase subunit A n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GXF5_METFV
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2618058_9
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(12882..13724)
DNA (843bp) protein (281aa)
CoB-CoM heterodisulfide reductase, subunit B
Heterodisulfide reductase subunit B n=1 Tax=uncultured archaeon GZfos28G7 RepID=Q64AU1_9ARCH
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2618058_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13721..14359)
DNA (639bp) protein (213aa)
CoB-CoM heterodisulfide reductase, subunit C
CoB-CoM heterodisulfide reductase, subunit C n=1 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WNK7_METH6
Uncharacterized protein {ECO:0000313|EMBL:KCZ70531.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_2618058_11
Coleofasciculus chthonoplastes, Coleofasciculus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(14478..15491)
DNA (1014bp) protein (338aa)
O-linked GlcNAc transferase
Tetratricopeptide repeat family n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4W588_9CYAN
Tetratricopeptide repeat family {ECO:0000313|EMBL:EDX70655.1}; TaxID=118168 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Coleofasciculus.;" source="Coleofasciculus chthonoplastes PCC 7420.;"
SR-VP_26_10_2020_1_100CM_scaffold_2618058_12
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

15737..16384
DNA (648bp) protein (216aa)
winged helix-turn-helix domain-containing protein/riboflavin kinase
Riboflavin kinase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=RIFK_METAC
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2618058_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

16381..17055
DNA (675bp) protein (225aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EAM9_METEZ
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|RuleBase:RU003843}; Short=DHBP synthase {ECO:0000256|RuleBase:RU003843};; EC=4.1.99.12 {ECO:0000256|RuleBase:RU003843};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_2618058_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(17105..17479)
DNA (375bp) protein (125aa)
transcriptional regulator, TrmB
Transcriptional regulator, TrmB n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B7K3_METTP
Putative transcriptional regulator {ECO:0000313|EMBL:KCZ71478.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_2618058_15
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(17636..18454)
DNA (819bp) protein (273aa)
rhomboid family protein
UPI0003D1AA42 related cluster n=1 Tax=unknown RepID=UPI0003D1AA42
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2618058_16
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists


18684..19421
DNA (738bp) protein (246aa)
rps13p; 30S ribosomal protein S13
30S ribosomal protein S13 n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I732_METCZ
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2618058_17
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists


19421..20020
DNA (600bp) protein (200aa)
30S ribosomal protein S4
30S ribosomal protein S4 n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E8Q6_METEZ
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2618058_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


20026..20406
DNA (381bp) protein (127aa)
SSU ribosomal protein S14e (S11p)
30S ribosomal protein S11 n=2 Tax=Methanosarcina mazei RepID=RS11_METMA
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_2618058_19
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

20407..21195
DNA (789bp) protein (263aa)
DNA-directed RNA polymerase subunit D (EC:2.7.7.6)
UPI0003D1C798 related cluster n=1 Tax=unknown RepID=UPI0003D1C798
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_2618058_trna_1
unknown

Not on your lists

21285..21369
DNA (85bp)
transferRNA Leu
SR-VP_26_10_2020_1_100CM_scaffold_2618058_20
RBG_13_RIF_OD1_07_37_56_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

21718..22533
DNA (816bp) protein (272aa)
ABC transporter-like protein
ABC transporter-like protein; K09687 antibiotic transport system ATP-binding protein id=5802131 bin=PER_GWA2_38_35 species=PER_GWC2_39_15 genus=PER_GWC2_39_15 taxon_order=PER_GWC2_39_15 taxon_class=PER_GWC2_39_15 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
Tax=RBG_13_RIF_OD1_07_37_56_curated
SR-VP_26_10_2020_1_100CM_scaffold_2618058_21
RIFOXYD2_FULL_PER_ii_58_15_curated, PER-ii, Bacteria

Not on your lists

22533..23282
DNA (750bp) protein (250aa)
multidrug ABC transporter, permease protein
multidrug ABC transporter permease; K09686 antibiotic transport system permease protein id=5094957 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
Tax=RIFOXYD2_FULL_PER_ii_58_15_curated
SR-VP_26_10_2020_1_100CM_scaffold_2618058_22
Methanosphaerula palustris, Methanosphaerula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

23303..24757
DNA (1455bp) protein (485aa)
EmrB/QacA subfamily drug resistance transporter
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GHH6_METPE
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:ACL16581.1}; Flags: Precursor;; TaxID=521011 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanosphaerula.;" source="Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c).;"
SR-VP_26_10_2020_1_100CM_scaffold_2618058_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(24828..25241)
DNA (414bp) protein (138aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TSP9_METAC
Rhodanese-related sulfurtransferase {ECO:0000313|EMBL:KCZ72772.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Displaying 24 items

View Taxonomy