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SR1-18-Sp65_coassembly_scaffold_123639

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Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR1-18-Sp65_coassembly_scaffold_123639_1

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comp(1..879)
DNA (879bp) protein (293aa)
Glycine--tRNA ligase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SRG8_9BACT
Marine sediment metagenome DNA, contig: S01H1_C00149 {ECO:0000313|EMBL:GAF72691.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
glycyl-tRNA synthetase
SR1-18-Sp65_coassembly_scaffold_123639_2
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

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comp(1073..1840)
DNA (768bp) protein (256aa)
DNA repair protein RecO n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EIB4_9CHLR
DNA repair protein RecO
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_123639_3
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

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comp(2011..2472)
DNA (462bp) protein (154aa)
Cytidine deaminase id=1919897 bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
cytidine deaminase
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_123639_4
RBG_16_Chloroflexi_64_43_curated, Chloroflexi, Bacteria

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comp(2453..3685)
DNA (1233bp) protein (411aa)
CBS domain containing protein n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G983_CHLAD
hypothetical protein
Tax=RBG_16_Chloroflexi_64_43_curated
SR1-18-Sp65_coassembly_scaffold_123639_5
Anaerolinea thermophila, Anaerolinea, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

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comp(3988..5289)
DNA (1302bp) protein (434aa)
glmU; UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase (EC:2.3.1.157 2.7.7.23)
Bifunctional protein GlmU n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N385_ANATU
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=926569 species="Bacteria; Chloroflexi; Anaerolineae; Anaerolineales; Anaerolineaceae; Anaerolinea.;" source="Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 /; UNI-1).;"
SR1-18-Sp65_coassembly_scaffold_123639_trna_5
unknown

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comp(5435..5505)
DNA (71bp)
transferRNA Gln
SR1-18-Sp65_coassembly_scaffold_123639_6
unknown

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comp(5549..6100)
DNA (552bp) protein (184aa)

This feature has no annotations

SR1-18-Sp65_coassembly_scaffold_123639_7
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6301..6738
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z3S1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM52436.1}; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
SR1-18-Sp65_coassembly_scaffold_123639_trna_4
unknown

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comp(9949..10021)
DNA (73bp)
transferRNA Ala
SR1-18-Sp65_coassembly_scaffold_123639_trna_3
unknown

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comp(10477..10550)
DNA (74bp)
transferRNA Ile
SR1-18-Sp65_coassembly_scaffold_123639_8
unknown

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comp(10575..11042)
DNA (468bp) protein (156aa)

This feature has no annotations

SR1-18-Sp65_coassembly_scaffold_123639_9
unknown

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comp(11190..11855)
DNA (666bp) protein (222aa)

This feature has no annotations

SR1-18-Sp65_coassembly_scaffold_123639_16S_1
unknown

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comp(12029..13500)
DNA (1472bp)
16S ribosomal RNA (16S rRNA)
SR1-18-Sp65_coassembly_scaffold_123639_10
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

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comp(13996..15255)
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B6L5_HERA2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX04324.1}; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
SR1-18-Sp65_coassembly_scaffold_123639_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(15522..17255)
DNA (1734bp) protein (578aa)
conserved hypothetical protein
Putative uncharacterized protein id=3526206 bin=GWC2_Methylomirabilis_70_16 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
SR1-18-Sp65_coassembly_scaffold_123639_trna_2
unknown

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comp(17468..17540)
DNA (73bp)
transferRNA Lys
SR1-18-Sp65_coassembly_scaffold_123639_trna_1
unknown

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17625..17699
DNA (75bp)
transferRNA Arg
SR1-18-Sp65_coassembly_scaffold_123639_12

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comp(17739..18383)
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI0003452997
Uncharacterized protein {ECO:0000313|EMBL:KKL21108.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SR1-18-Sp65_coassembly_scaffold_123639_13
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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18638..19306
DNA (669bp) protein (223aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TQK8_9CHLR
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EFH87675.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
two component transcriptional regulator, LuxR family
SR1-18-Sp65_coassembly_scaffold_123639_14
RBG_16_Chloroflexi_64_43_curated, Chloroflexi, Bacteria

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comp(19301..22525)
DNA (3225bp) protein (1075aa)
Putative signaling protein id=2112760 bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
putative signaling protein
Tax=RBG_16_Chloroflexi_64_43_curated
SR1-18-Sp65_coassembly_scaffold_123639_15
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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22985..23905
DNA (921bp) protein (307aa)
PDZ/DHR/GLGF domain protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EM64_9CHLR
PDZ/DHR/GLGF domain protein {ECO:0000313|EMBL:CCF85777.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
PDZ/DHR/GLGF domain-containing protein
SR1-18-Sp65_coassembly_scaffold_123639_16
RLO_Planctomycetes_39_13, Planctomycetes, Bacteria

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comp(24090..25979)
DNA (1890bp) protein (630aa)
Uncharacterized protein id=2240873 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Planctomycetes_39_13_curated
SR1-18-Sp65_coassembly_scaffold_123639_17
Pseudanabaena sp. PCC 7367, Pseudanabaena, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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26124..26378
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Pseudanabaena sp. PCC 7367 RepID=K9SK40_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY70169.1}; TaxID=82654 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Pseudanabaena.;" source="Pseudanabaena sp. PCC 7367.;"
SR1-18-Sp65_coassembly_scaffold_123639_18
CG_Anaero_04, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

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26449..28404
DNA (1956bp) protein (652aa)
hypothetical protein n=1 Tax=Calothrix sp. PCC 7103 RepID=UPI0002D62047
hypothetical protein
Tax=CG_Anaero_04
SR1-18-Sp65_coassembly_scaffold_123639_19
GWC2_Planctomycetes_45_44_curated, Phycisphaerae, Planctomycetes, Bacteria

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comp(28727..29239)
DNA (513bp) protein (171aa)
PKD domain containing protein n=1 Tax=Methanolinea tarda NOBI-1 RepID=G6FJP5_9EURY
PA14 domain-containing protein
Tax=GWC2_Planctomycetes_45_44_curated
SR1-18-Sp65_coassembly_scaffold_123639_20

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comp(29369..30421)
DNA (1053bp) protein (351aa)
Peptidase n=1 Tax=uncultured prokaryote RepID=H5S8U5_9ZZZZ
Peptidase {ECO:0000313|EMBL:BAL52581.1}; TaxID=198431 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
peptidase
SR1-18-Sp65_coassembly_scaffold_123639_21
Anaerolinea thermophila, Anaerolinea, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

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comp(30418..30813)
DNA (396bp) protein (132aa)
Putative uncharacterized protein n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N0V7_ANATU
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ62502.1}; TaxID=926569 species="Bacteria; Chloroflexi; Anaerolineae; Anaerolineales; Anaerolineaceae; Anaerolinea.;" source="Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 /; UNI-1).;"
SR1-18-Sp65_coassembly_scaffold_123639_22
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

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comp(30821..31531)
DNA (711bp) protein (237aa)
RNA polymerase sigma factor id=1263637 bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
SCP-like extracellular protein
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_123639_23
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

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comp(31544..32362)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Natronorubrum sulfidifaciens JCM 14089 RepID=L9W4U0_9EURY
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_123639_24
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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32389..32706
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P5H2_AROAE
Membrane protein {ECO:0000313|EMBL:KHD05199.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
efflux system
Displaying items 1-30 of 41 in total

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