ggKbase home page

SR1-18-Sp65_coassembly_scaffold_85846

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR1-18-Sp65_coassembly_scaffold_85846_1
Caminibacter mediatlanticus, Caminibacter, Nautiliales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..163
DNA (162bp) protein (54aa)
Elongation factor Tu (Fragment) n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DE98_9PROT
tuf2; elongation factor Tu 2
Elongation factor Tu {ECO:0000256|RuleBase:RU004061}; Flags: Fragment;; TaxID=391592 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Nautiliales; Nautiliaceae; Caminibacter.;" source="Caminibacter mediatlanticus TB-2.;"
SR1-18-Sp65_coassembly_scaffold_85846_2
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

443..673
DNA (231bp) protein (77aa)
Protein translocase subunit SecE n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8KYI5_FRAAD
Preprotein translocase subunit SecE
Tax=RBG_16_Chloroflexi_63_12_curated
SR1-18-Sp65_coassembly_scaffold_85846_3
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

676..1605
DNA (930bp) protein (310aa)
atm:ANT_18990 nusG; transcription antitermination protein NusG; K02601 transcriptional antiterminator NusG id=1246327 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
nusG; transcription antitermination protein NusG
Tax=RBG_13_Chloroflexi_68_17_curated
SR1-18-Sp65_coassembly_scaffold_85846_4
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists


1799..2224
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Anaerobaculum hydrogeniformans ATCC BAA-1850 RepID=D3L3F1_9BACT
rplK; 50S ribosomal protein L11
Tax=RBG_16_Chloroflexi_57_9_curated
SR1-18-Sp65_coassembly_scaffold_85846_5
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists


2338..2601
DNA (264bp) protein (88aa)
ribosomal protein L1 suspected. See adjacent gene [SR1-18-Sp65_coassembly_scaffold_85846_6].
deb:DehaBAV1_0883 rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 id=1242434 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
Tax=RBG_13_Chloroflexi_51_36_curated
50S ribosomal protein L1
SR1-18-Sp65_coassembly_scaffold_85846_6
CG_Anaero_03, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists


2553..2912
DNA (360bp) protein (120aa)
50S ribosomal protein L1 n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CD63_THET1
50S ribosomal protein L1
Tax=CG_Anaero_03
SR1-18-Sp65_coassembly_scaffold_85846_7
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists


3197..3724
DNA (528bp) protein (176aa)
50S ribosomal protein L10 n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SLE0_THEM7
50S ribosomal protein L10
Tax=RBG_16_Chloroflexi_57_9_curated
SR1-18-Sp65_coassembly_scaffold_85846_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3969..4367
DNA (399bp) protein (133aa)
50S ribosomal protein L7/L12 n=2 Tax=Rhizobium etli RepID=RL7_RHIE6
rplL; 50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
SR1-18-Sp65_coassembly_scaffold_85846_trna_1
unknown

Not on your lists

4588..4660
DNA (73bp)
transferRNA Ala
SR1-18-Sp65_coassembly_scaffold_85846_9
GWA2_OD1_37_10, Parcubacteria, Bacteria

Not on your lists

4678..5568
DNA (891bp) protein (297aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ22712.1}; TaxID=1618810 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_37_10.;"
id=3984231 bin=GWF2_OP3_43_52 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
SR1-18-Sp65_coassembly_scaffold_85846_trna_2
unknown

Not on your lists

5578..5650
DNA (73bp)
transferRNA Ala
SR1-18-Sp65_coassembly_scaffold_85846_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

6095..6595
DNA (501bp) protein (167aa)
3-oxoadipate enol-lactonase (EC:3.1.1.24)
Putative Carboxylesterase {ECO:0000313|EMBL:CBE70199.1}; EC=3.1.1.1 {ECO:0000313|EMBL:CBE70199.1};; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Putative Carboxylesterase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MN57_9BACT
SR1-18-Sp65_coassembly_scaffold_85846_11
GWF2_Planctomycetes_42_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists


7012..9663
DNA (2652bp) protein (884aa)
leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase id=3862202 bin=GWF2_Planctomycetes_42_9 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
Tax=GWF2_Planctomycetes_42_9_curated
SR1-18-Sp65_coassembly_scaffold_85846_12
bacterium UASB270, Bacteria

Not on your lists

comp(9822..12758)
DNA (2937bp) protein (979aa)
DNA segregation ATPase, FtsK/SpoIIIE family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNG3_SINAD
Cell divisionFtsK/SpoIIIE {ECO:0000313|EMBL:GAK60497.1}; TaxID=1499967 species="Bacteria.;" source="bacterium UASB270.;"
DNA segregation ATPase FtsK
SR1-18-Sp65_coassembly_scaffold_85846_13
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(13230..13559)
DNA (330bp) protein (110aa)
Putative uncharacterized protein id=3224045 bin=GWC2_Syntrophobacterales_56_13 species=Runella slithyformis genus=Runella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=RBG_16_Chloroflexi_57_11_curated
SR1-18-Sp65_coassembly_scaffold_85846_14
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13567..14640)
DNA (1074bp) protein (358aa)
RNA-directed DNA polymerase n=1 Tax=Scytonema hofmanni RepID=UPI0003466F23
Uncharacterized protein {ECO:0000313|EMBL:ETX01277.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
RNA-directed DNA polymerase
SR1-18-Sp65_coassembly_scaffold_85846_15
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(14709..16025)
DNA (1317bp) protein (439aa)
Uncharacterized protein id=2240873 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
hypothetical protein
Tax=RBG_16_Chloroflexi_57_11_curated
Displaying 17 items

View Taxonomy