ggKbase home page

SR1-18-Sp65_coassembly_scaffold_474754

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR1-18-Sp65_coassembly_scaffold_474754_1
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(501..1649)
DNA (1149bp) protein (383aa)
Xaa-Pro dipeptidase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I021_CALAS
pepQ; Xaa-Pro dipeptidase
Xaa-Pro dipeptidase {ECO:0000313|EMBL:BAL98608.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
SR1-18-Sp65_coassembly_scaffold_474754_2
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(1696..2928)
DNA (1233bp) protein (411aa)
Dihydrolipoyllysine-residue succinyltransferase (EC:2.3.1.61)
dehydrogenase n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B3BBBD
Tax=RBG_13_Planctomycetes_60_9_curated
SR1-18-Sp65_coassembly_scaffold_474754_3
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

comp(3020..5140)
DNA (2121bp) protein (707aa)
jan:Jann_3081 dehydrogenase, E1 component; K11381 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] id=1246850 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
2-oxoisovalerate dehydrogenase E1 component
Tax=RBG_13_Chloroflexi_68_17_curated
SR1-18-Sp65_coassembly_scaffold_474754_4
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5262..6179)
DNA (918bp) protein (306aa)
Membrane protein, putative n=1 Tax=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) RepID=Q74FN2_GEOSL
hypothetical protein
Membrane protein, putative {ECO:0000313|EMBL:AAR33905.1}; TaxID=243231 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA).;"
SR1-18-Sp65_coassembly_scaffold_474754_5
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(6223..7734)
DNA (1512bp) protein (504aa)
Putative oxidoreductase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I4P7_CALAS
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAM00235.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
SR1-18-Sp65_coassembly_scaffold_474754_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8126..8848)
DNA (723bp) protein (241aa)
Beta-phosphoglucomutase id=4367563 bin=GWA2_Methylomirabilis_73_35 species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HAD family hydrolase
Tax=GWA2_Rokubacteria_73_35_curated
SR1-18-Sp65_coassembly_scaffold_474754_7
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(8869..9786)
DNA (918bp) protein (306aa)
Putative L-threonine dehydrogenase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I4Q3_CALAS
putative L-threonine dehydrogenase
Putative L-threonine dehydrogenase {ECO:0000313|EMBL:BAM00241.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
SR1-18-Sp65_coassembly_scaffold_474754_8
unknown

Not on your lists

comp(9847..10479)
DNA (633bp) protein (211aa)

This feature has no annotations

SR1-18-Sp65_coassembly_scaffold_474754_9
unknown

Not on your lists

10605..10919
DNA (315bp) protein (105aa)

This feature has no annotations

SR1-18-Sp65_coassembly_scaffold_474754_10
RIFOXYC12_FULL_Chloroflexi_59_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(10828..11349)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Calothrix sp. PCC 7103 RepID=UPI000306C328
hypothetical protein
Tax=RIFOXYC12_FULL_Chloroflexi_59_14_curated
SR1-18-Sp65_coassembly_scaffold_474754_11
bacterium UASB270, Bacteria

Not on your lists

comp(11411..12334)
DNA (924bp) protein (308aa)
Glucokinase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I4P4_CALAS
Glucokinase, ROK family {ECO:0000313|EMBL:GAK56163.1}; TaxID=1499967 species="Bacteria.;" source="bacterium UASB270.;"
glk; glucokinase
SR1-18-Sp65_coassembly_scaffold_474754_12

Not on your lists

comp(12547..13680)
DNA (1134bp) protein (378aa)
hypothetical protein n=1 Tax=Spirochaeta alkalica RepID=UPI00035E7048
Marine sediment metagenome DNA, contig: S03H2_C00280 {ECO:0000313|EMBL:GAH29870.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative oxidoreductase
SR1-18-Sp65_coassembly_scaffold_474754_13
Pseudothermotoga thermarum, Pseudothermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(13766..14662)
DNA (897bp) protein (299aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family n=1 Tax=Thermotoga thermarum DSM 5069 RepID=F7YUY9_9THEM
CUT1 family carbohydrate ABC transporter membrane protein 2
Carbohydrate ABC transporter membrane protein 2, CUT1 family {ECO:0000313|EMBL:AEH51556.1}; Flags: Precursor;; TaxID=688269 species="Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Pseudothermotoga.;" source="Pseudothermotoga thermarum DSM 5069.;"
SR1-18-Sp65_coassembly_scaffold_474754_14
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(14659..15663)
DNA (1005bp) protein (335aa)
CUT1 family carbohydrate ABC transporter membrane protein 1; K02025 multiple sugar transport system permease protein id=24436283 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermotoga thermarum genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
binding-protein-dependent transport system inner membrane protein
Tax=RBG_16_Chloroflexi_63_12_curated
SR1-18-Sp65_coassembly_scaffold_474754_15
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(15798..17339)
DNA (1542bp) protein (514aa)
family 1 extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein id=24436282 bin=RBG_19FT_COMBO_GAL15_69_19 species=Dictyoglomus turgidum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
extracellular solute-binding protein
Tax=CG_Anaero_02
SR1-18-Sp65_coassembly_scaffold_474754_16
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(17514..18464)
DNA (951bp) protein (317aa)
Uncharacterized conserved protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGV8_CHLTF
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:AEP11458.1}; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
SR1-18-Sp65_coassembly_scaffold_474754_17
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(18621..19421)
DNA (801bp) protein (267aa)
Ribulose-phosphate 3-epimerase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I4Q2_CALAS
rpe; ribulose-phosphate 3-epimerase
Ribulose-phosphate 3-epimerase {ECO:0000313|EMBL:BAM00240.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
SR1-18-Sp65_coassembly_scaffold_474754_18
Oceanithermus profundus, Oceanithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(19477..20448)
DNA (972bp) protein (324aa)
Transcriptional regulator, DeoR family n=1 Tax=Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) RepID=E4U7P8_OCEP5
DeoR transcriptional regulator
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:ADR36497.1}; TaxID=670487 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Oceanithermus.;" source="Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 /; 506).;"
SR1-18-Sp65_coassembly_scaffold_474754_19
RBG_19FT_COMBO_Chloroflexi_50_10_curated, Chloroflexi, Bacteria

Not on your lists

20754..21509
DNA (756bp) protein (252aa)
hypothetical protein id=12557064 bin=CNBR_ACIDO species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Fe-S oxidoreductase
Tax=RBG_19FT_COMBO_Chloroflexi_50_10_curated
SR1-18-Sp65_coassembly_scaffold_474754_20
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

21490..22929
DNA (1440bp) protein (480aa)
iron-sulfur cluster binding protein id=12557063 bin=CNBR_ACIDO species=Chloroflexus aurantiacus genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
iron-sulfur cluster binding protein
Iron-sulfur cluster binding protein {ECO:0000313|EMBL:ACL25586.1}; TaxID=326427 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aggregans (strain MD-66 / DSM 9485).;"
SR1-18-Sp65_coassembly_scaffold_474754_21
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

23240..23920
DNA (681bp) protein (227aa)
hypothetical protein; K00782 hypothetical protein id=12557062 bin=CNBR_ACIDO species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RBG_16_Chloroflexi_63_12_curated
SR1-18-Sp65_coassembly_scaffold_474754_22
Methanosarcina siciliae, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(23937..24671)
DNA (735bp) protein (245aa)
Uncharacterized protein {ECO:0000313|EMBL:AKB28889.1}; TaxID=1434120 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina siciliae T4/M.;"
hypothetical protein
SR1-18-Sp65_coassembly_scaffold_474754_23
unknown

Not on your lists

comp(24786..25292)
DNA (507bp) protein (169aa)

This feature has no annotations

Displaying 23 items

View Taxonomy