ggKbase home page

SR1-18-Sp65_coassembly_scaffold_148270

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR1-18-Sp65_coassembly_scaffold_148270_1
Desulfovibrio alkalitolerans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..687)
DNA (687bp) protein (229aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7UN99_9DELT
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:EPR35489.1}; TaxID=1121439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alkalitolerans DSM 16529.;"
CarD family transcriptional regulator
SR1-18-Sp65_coassembly_scaffold_148270_2
unknown

Not on your lists

939..1439
DNA (501bp) protein (167aa)

This feature has no annotations

SR1-18-Sp65_coassembly_scaffold_148270_3
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(1467..2120)
DNA (654bp) protein (218aa)
LuxR family transcriptional regulator id=24484805 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
two-component response regulator
Tax=CG_Anaero_02
SR1-18-Sp65_coassembly_scaffold_148270_4
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(2074..4863)
DNA (2790bp) protein (930aa)
Putative two-component histidine kinase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I5Q7_CALAS
putative two-component histidine kinase
Tax=CG_Anaero_02
SR1-18-Sp65_coassembly_scaffold_148270_5
Desulfobacca acetoxidans, Desulfobacca, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4865..5647)
DNA (783bp) protein (261aa)
uroporphyrin-III C-methyltransferase (EC:2.1.1.107 4.2.1.75)
Uroporphyrin-III C-methyltransferase {ECO:0000313|EMBL:AEB09706.1}; EC=2.1.1.107 {ECO:0000313|EMBL:AEB09706.1};; EC=4.2.1.75 {ECO:0000313|EMBL:AEB09706.1};; TaxID=880072 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfobacca.;" source="Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2).;"
Uroporphyrin-III C-methyltransferase n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NJQ1_DESAR
SR1-18-Sp65_coassembly_scaffold_148270_6
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(5866..6507)
DNA (642bp) protein (214aa)
siroheme synthase (EC:1.3.1.76)
Siroheme synthase n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R7U2_AMMDK
Tax=CG_Anaero_02
SR1-18-Sp65_coassembly_scaffold_148270_7
BJP_IG2069_Anaerolineales_43_63, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

6706..8214
DNA (1509bp) protein (503aa)
Major facilitator superfamily MFS_1 id=2122725 bin=GWB2_Chloroflexi_54_36 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
major facilitator superfamily protein
Tax=BJP_IG2069_Anaerolineales_43_63
SR1-18-Sp65_coassembly_scaffold_148270_8
RBG_16_Deltaproteobacteria_58_17_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8318..9985
DNA (1668bp) protein (556aa)
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases id=4400014 bin=GWC2_Syntrophobacterales_56_13 species=Hahella chejuensis genus=Hahella taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Asp-tRNAAsn/Glu-tRNAGln amidotransferase subunit A-like protein
Tax=RBG_16_Deltaproteobacteria_58_17_curated
SR1-18-Sp65_coassembly_scaffold_148270_9
RBG_16_Chloroflexi_58_14_curated, Chloroflexi, Bacteria

Not on your lists

10103..11722
DNA (1620bp) protein (540aa)
Transcriptional regulator, CdaR n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NGD5_ROSCS
transcriptional regulator CdaR
Tax=RBG_16_Chloroflexi_58_14_curated
SR1-18-Sp65_coassembly_scaffold_148270_10
unknown

Not on your lists

12181..12363
DNA (183bp) protein (61aa)

This feature has no annotations

SR1-18-Sp65_coassembly_scaffold_148270_11
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

12379..14064
DNA (1686bp) protein (562aa)
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase id=4958394 bin=GWC2_Chloroflexi_49_37 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
Tax=RBG_16_Chloroflexi_63_12_curated
SR1-18-Sp65_coassembly_scaffold_148270_12
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

14147..15844
DNA (1698bp) protein (566aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
Acetolactate synthase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILZ1_KORVE
acetolactate synthase large subunit
SR1-18-Sp65_coassembly_scaffold_148270_13
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

15922..16461
DNA (540bp) protein (180aa)
ilvN; acetolactate synthase small subunit (EC:2.2.1.6)
Acetolactate synthase, small subunit id=2074819 bin=GWD2_Chloroflexi_49_16 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
Tax=RBG_16_Chloroflexi_57_9_curated
SR1-18-Sp65_coassembly_scaffold_148270_14
R_OD1_Kaiserbacteria_49_16, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

16515..17567
DNA (1053bp) protein (351aa)
ilvC; ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase id=2074820 bin=GWD2_Chloroflexi_49_16 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
Tax=RIFCSPHIGHO2_02_FULL_OD1_Kaiserbacteria_49_16_curated
SR1-18-Sp65_coassembly_scaffold_148270_15
R_OD1_Kaiserbacteria_49_16, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

17569..19083
DNA (1515bp) protein (505aa)
ABC transporter related n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FEN2_DESAA
ABC transporter
Tax=RIFCSPHIGHO2_02_FULL_OD1_Kaiserbacteria_49_16_curated
SR1-18-Sp65_coassembly_scaffold_148270_16
Anaerolinea thermophila, Anaerolinea, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

19085..20686
DNA (1602bp) protein (534aa)
leuA; 2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; TaxID=926569 species="Bacteria; Chloroflexi; Anaerolineae; Anaerolineales; Anaerolineaceae; Anaerolinea.;" source="Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 /; UNI-1).;"
2-isopropylmalate synthase n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N028_ANATU
SR1-18-Sp65_coassembly_scaffold_148270_17
CG_Anaero_03, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

20658..22040
DNA (1383bp) protein (461aa)
leuC; 3-isopropylmalate dehydratase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit id=2204023 bin=GWB2_Chloroflexi_49_20 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
Tax=CG_Anaero_03
SR1-18-Sp65_coassembly_scaffold_148270_18
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

21991..22584
DNA (594bp) protein (198aa)
leuD; isopropylmalate isomerase small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit id=4958401 bin=GWC2_Chloroflexi_49_37 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
Tax=CG_Anaero_02
SR1-18-Sp65_coassembly_scaffold_148270_19
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

22616..24181
DNA (1566bp) protein (522aa)
2-isopropylmalate synthase/homocitrate synthase family protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HB60_ANADF
putative alpha-isopropylmalate/homocitrate synthase family transferase
Tax=RBG_16_Chloroflexi_63_12_curated
SR1-18-Sp65_coassembly_scaffold_148270_20
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24267..25355
DNA (1089bp) protein (363aa)
leuB1; 3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GW88_SORC5
Tax=RBG_16_Anaeromyxobacter_69_14_curated
SR1-18-Sp65_coassembly_scaffold_148270_21
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26019..27134
DNA (1116bp) protein (372aa)
Glutamate synthase (NADPH) GltB1 subunit n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AQZ9_PELPD
hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
SR1-18-Sp65_coassembly_scaffold_148270_22
Desulfuromonas acetoxidans, Desulfuromonas, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27122..28879
DNA (1758bp) protein (586aa)
Ferredoxin-dependent glutamate synthase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JWG3_DESAC
Ferredoxin-dependent glutamate synthase {ECO:0000313|EMBL:EAT14605.1}; TaxID=281689 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Desulfuromonadaceae; Desulfuromonas.;" source="Desulfuromonas acetoxidans DSM 684.;"
glutamate synthase
Displaying 22 items

View Taxonomy