ggKbase home page

SR2-18-B1_coassembly_322018

Search features with annotation key words

Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR2-18-B1_coassembly_322018_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

2..1117
-----------------
DNA (1116bp)
protein (372aa)
argininosuccinate synthase (EC:6.3.4.5); K01940 argininosuccinate synthase [EC:6.3.4.5] id=12554044 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
argininosuccinate synthase (EC:6.3.4.5)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
SR2-18-B1_coassembly_322018_2
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1120..1299
-----------------
DNA (180bp)
protein (60aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00581, ECO:0000256|SAAS:SAAS00009500}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00581, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00581}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
Argininosuccinate synthase n=1 Tax=Herbaspirillum sp. CF444 RepID=J3DA61_9BURK
argG; argininosuccinate synthetase
SR2-18-B1_coassembly_322018_3
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

1352..2749
-----------------
DNA (1398bp)
protein (466aa)
Phosphomethylpyrimidine synthase {ECO:0000255|HAMAP-Rule:MF_00089}; EC=4.1.99.17 {ECO:0000255|HAMAP-Rule:MF_00089};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00089}; Short=HMP-P synthase {ECO:0000255|HAMAP-Rule:MF_00089};; Short=HMP-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00089};; Short=HMPP synthase {ECO:0000255|HAMAP-Rule:MF_00089};; Thiamine biosynthesis protein ThiC {ECO:0000255|HAMAP-Rule:MF_00089}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
Phosphomethylpyrimidine synthase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=THIC_SOLUE
thiamine biosynthesis protein ThiC
SR2-18-B1_coassembly_322018_4
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

2915..6175
-----------------
DNA (3261bp)
protein (1087aa)
TonB-dependent receptor, plug n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01WU0_SOLUE
TonB-dependent receptor, plug
TonB-dependent receptor, plug {ECO:0000313|EMBL:ABJ85875.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SR2-18-B1_coassembly_322018_5
Geoalkalibacter subterraneus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6172..6453)
-----------------
DNA (282bp)
protein (94aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI000360ABCF
toxin Y4kP
Toxin Y4kP {ECO:0000313|EMBL:AJF07564.1}; TaxID=483547 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter subterraneus.;"
SR2-18-B1_coassembly_322018_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(6450..6707)
-----------------
DNA (258bp)
protein (86aa)
Stackhouse genomic scaffold, scaffold_160 n=1 Tax=Chondrus crispus RepID=R7Q8X8_CHOCR
CopG family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Displaying 6 items

View Taxonomy