ggKbase home page

SR-2_scaffold_141_2871748

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-2_scaffold_141_2871748_1
GWC2_Elusimicrobia_65_9_curated, Elusimicrobia, Bacteria

Not on your lists

2..166
DNA (165bp) protein (55aa)
Two component transcriptional regulator, winged helix family id=1843310 bin=GWA2_Elusimicrobia_66_18 species=Thermomonospora curvata genus=Thermomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
Tax=GWC2_Elusimicrobia_65_9_curated
SR-2_scaffold_141_2871748_2
CG_Elusi_04, Elusimicrobia, Bacteria

Not on your lists

236..1480
DNA (1245bp) protein (415aa)
Response regulator receiver sensor signal transduction histidine kinase id=1943143 bin=GWB2_Elusimicrobium_63_22 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Elusimicrobium_63_22 organism_group=Elusimicrobia organism_desc=Good -
signal transduction histidine kinase
Tax=CG_Elusi_04
SR-2_scaffold_141_2871748_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1518..3206
DNA (1689bp) protein (563aa)
Multi-sensor signal transduction histidine kinase n=1 Tax=Marinobacter lipolyticus SM19 RepID=R8B4T0_9ALTE
multi-sensor signal transduction histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SR-2_scaffold_141_2871748_4
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

3203..3646
DNA (444bp) protein (148aa)
response regulator receiver protein id=14426277 bin=bin1_lowGC species=Methanobacterium formicicum genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=bin1_lowGC organism_group=Unknown_CP
response regulator receiver protein
Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
SR-2_scaffold_141_2871748_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

3663..5579
DNA (1917bp) protein (639aa)
Multi-sensor hybrid histidine kinase id=3068375 bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
PAS/PAC sensor hybrid histidine kinase
Tax=GWC2_Rokubacteria_70_16_curated
SR-2_scaffold_141_2871748_6
GWC2_Elusimicrobia_65_9_curated, Elusimicrobia, Bacteria

Not on your lists

comp(5541..6557)
DNA (1017bp) protein (339aa)
tRNA-dihydrouridine synthase id=3526104 bin=GWA2_Elusimicrobia_66_18 species=Clostridium citroniae genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
nifR3; TIM barrel oxidoreductase NifR3
Tax=GWC2_Elusimicrobia_65_9_curated
SR-2_scaffold_141_2871748_7
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

6730..7293
DNA (564bp) protein (188aa)
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog id=4270880 bin=GWA2_Elusimicrobia_69_24 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
RpoE; DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein
Tax=GWA2_Elusimicrobia_69_24_curated
SR-2_scaffold_141_2871748_8
unknown

Not on your lists

7290..7856
DNA (567bp) protein (189aa)

This feature has no annotations

SR-2_scaffold_141_2871748_9
RIFOXYA2_FULL_Elusimicrobia_69_6_curated, Elusimicrobia, Bacteria

Not on your lists

7858..8424
DNA (567bp) protein (189aa)
hypothetical protein id=4270873 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
Flp pilus assembly protein CpaB
Tax=RIFOXYA2_FULL_Elusimicrobia_69_6_curated
SR-2_scaffold_141_2871748_10
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(8490..10130)
DNA (1641bp) protein (547aa)
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI00036E9EFE
TPR repeat-containing protein
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
SR-2_scaffold_141_2871748_11
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

comp(10534..11052)
DNA (519bp) protein (173aa)
Glyoxalase/bleomycin resistance protein/dioxygenase id=4703274 bin=GWC2_ACD39_50_8 species=Vibrio mimicus genus=Vibrio taxon_order=Vibrionales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_ACD39_50_8 organism_group=ACD39
glyoxalase/bleomycin resistance protein/dioxygenase
Tax=CG_Deferri_01
SR-2_scaffold_141_2871748_12
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11299..12951
DNA (1653bp) protein (551aa)
Uncharacterized protein n=1 Tax=Rhodopirellula sp. SWK7 RepID=M5TI17_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EYR67105.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
SR-2_scaffold_141_2871748_13
unknown

Not on your lists

comp(13000..13242)
DNA (243bp) protein (81aa)

This feature has no annotations

SR-2_scaffold_141_2871748_14
GWB2_Elusimicrobia_63_16_curated, Elusimicrobia, Bacteria

Not on your lists

comp(13402..14067)
DNA (666bp) protein (222aa)
Glutaredoxin-like domain protein id=2229271 bin=GWA2_Elusi-like_A8_64_40 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Elusi-like_A8_64_40 organism_group=Elusimicrobia
glutaredoxin-like domain-containing protein
Tax=GWB2_Elusimicrobia_63_16_curated
SR-2_scaffold_141_2871748_15
Lyngbya confervoides, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(14315..16255)
DNA (1941bp) protein (647aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00037AB42C
Uncharacterized protein {ECO:0000313|EMBL:KIF41351.1}; TaxID=1574623 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya confervoides BDU141951.;"
putative adenylate/guanylate cyclase
SR-2_scaffold_141_2871748_16
RBG_16_Desulfobacca_58_9_curated, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16286..17704
DNA (1419bp) protein (473aa)
PASTA domain containing protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y6N4_LEPCP
TIR domain-containing protein
Tax=RBG_16_Desulfobacca_58_9_curated
SR-2_scaffold_141_2871748_17
RIFOXYA2_FULL_Elusimicrobia_69_6_curated, Elusimicrobia, Bacteria

Not on your lists

comp(17708..18991)
DNA (1284bp) protein (428aa)
Macrolide efflux ABC transporter, permease/ATP-binding protein id=2106903 bin=GWA2_Elusimicrobia_69_24 species=Blastopirellula marina genus=Blastopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
macrolide ABC transporter permease
Tax=RIFOXYA2_FULL_Elusimicrobia_69_6_curated
SR-2_scaffold_141_2871748_18
RIFOXYB2_FULL_Elusimicrobia_62_6_curated, Elusimicrobia, Bacteria

Not on your lists

comp(18988..20268)
DNA (1281bp) protein (427aa)
Macrolide efflux ABC transporter, permease/ATP-binding protein id=2106903 bin=GWA2_Elusimicrobia_69_24 species=Blastopirellula marina genus=Blastopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
ABC transporter permease
Tax=RIFOXYB2_FULL_Elusimicrobia_62_6_curated
SR-2_scaffold_141_2871748_19
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(20394..21050)
DNA (657bp) protein (219aa)
ABC transporter ATP-binding protein id=2106899 bin=GWA2_Elusimicrobia_69_24 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
ABC-type transporter ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
SR-2_scaffold_141_2871748_20
RIFOXYD12_FULL_Elusimicrobia_66_9_curated, Elusimicrobia, Bacteria

Not on your lists

comp(21047..22000)
DNA (954bp) protein (318aa)
Putative membrane protein id=2106895 bin=GWA2_Elusimicrobia_69_24 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
Tax=RIFOXYD12_FULL_Elusimicrobia_66_9_curated
SR-2_scaffold_141_2871748_21
RIFOXYD12_FULL_Elusimicrobia_66_9_curated, Elusimicrobia, Bacteria

Not on your lists

comp(21994..23271)
DNA (1278bp) protein (426aa)
Outer membrane efflux protein id=2106892 bin=GWA2_Elusimicrobia_69_24 species=Pelodictyon phaeoclathratiforme genus=Pelodictyon taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
outer membrane efflux protein
Tax=RIFOXYD12_FULL_Elusimicrobia_66_9_curated
SR-2_scaffold_141_2871748_22
GWA2_Bdellovibrionales_49_15_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

23336..23851
DNA (516bp) protein (172aa)
hypothetical protein id=4715554 bin=GWA2__Bacteriovorax-rel_49_15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2__Bacteriovorax-rel_49_15 organism_group=Deltaproteobacteria
Tax=GWA2_Bdellovibrionales_49_15_curated
SR-2_scaffold_141_2871748_23
RIFOXYD1_FULL_Bdellovibrionales_55_31_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

24029..24895
DNA (867bp) protein (289aa)
UPF0761 membrane protein Swoo_4618 id=3676585 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Shewanella woodyi genus=Shewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
putative ribonuclease BN
Tax=RIFOXYD1_FULL_Bdellovibrionales_55_31_curated
SR-2_scaffold_141_2871748_24
R_Elusimicrobia_64_13, Elusimicrobia, Bacteria

Not on your lists

24909..26585
DNA (1677bp) protein (559aa)
hypothetical protein id=3525548 bin=GWA2_Elusimicrobia_66_18 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_64_13_curated
SR-2_scaffold_141_2871748_25
R_Elusimicrobia_57_9, Elusimicrobia, Bacteria

Not on your lists

26689..27312
DNA (624bp) protein (208aa)
MotA/TolQ/ExbB proton channel family protein id=3525547 bin=GWA2_Elusimicrobia_66_18 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
MotA/TolQ/ExbB proton channel family protein
Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_57_9_curated
SR-2_scaffold_141_2871748_26
R_Elusimicrobia_57_9, Elusimicrobia, Bacteria

Not on your lists

27317..27727
DNA (411bp) protein (137aa)
TonB system transport protein ExbD2 id=3525546 bin=GWA2_Elusimicrobia_66_18 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
outer membrane transport energization protein ExbD
Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_57_9_curated
SR-2_scaffold_141_2871748_27
R_Elusimicrobia_57_9, Elusimicrobia, Bacteria

Not on your lists

27766..28533
DNA (768bp) protein (256aa)
TonB-dependent receptor id=3525545 bin=GWA2_Elusimicrobia_66_18 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
TonB family protein
Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_57_9_curated
SR-2_scaffold_141_2871748_28
R_Elusimicrobia_57_9, Elusimicrobia, Bacteria

Not on your lists

comp(28608..29762)
DNA (1155bp) protein (385aa)
putative ribonuclease D (EC:3.1.13.5)
Putative ribonuclease D id=3525542 bin=GWA2_Elusimicrobia_66_18 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_57_9_curated
SR-2_scaffold_141_2871748_29
R_Elusimicrobia_57_9, Elusimicrobia, Bacteria

Not on your lists

comp(29765..30589)
DNA (825bp) protein (275aa)
Pyrroline-5-carboxylate reductase id=3525541 bin=GWA2_Elusimicrobia_66_18 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
pyrroline-5-carboxylate reductase
Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_57_9_curated
SR-2_scaffold_141_2871748_30
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

30701..31642
DNA (942bp) protein (314aa)
sugar kinase id=2307949 bin=GWA2_Elusimicrobia_69_24 species=Streptomyces rimosus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
sugar kinase
Tax=GWA2_Elusimicrobia_69_24_curated
Displaying items 1-30 of 46 in total

View Taxonomy