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SRVP18_trench_6_60cm_scaffold_5161

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SRVP18_trench_6_60cm_scaffold_5161_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3..224
DNA (222bp) protein (74aa)
Pyridoxal 5'-phosphate synthase subunit PdxT {ECO:0000256|HAMAP-Rule:MF_01615}; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01615};; Pdx2 {ECO:0000256|HAMAP-Rule:MF_01615}; Pyridoxal 5'-phosphate synthase glutaminase subunit {ECO:0000256|HAMAP-Rule:MF_01615}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
pdxT; glutamine amidotransferase subunit PdxT (EC:2.6.-.-)
Glutamine amidotransferase subunit PdxT n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=PDXT_UNCMA
SRVP18_trench_6_60cm_scaffold_5161_2
unknown

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comp(234..986)
DNA (753bp) protein (251aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5161_3
unknown

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comp(1014..1223)
DNA (210bp) protein (70aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5161_4
unknown

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comp(1449..2819)
DNA (1371bp) protein (457aa)
Uncharacterized protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E849_METEZ
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5161_5
unknown

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comp(2821..3261)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E849_METEZ
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5161_6
unknown

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comp(3251..3358)
DNA (108bp) protein (36aa)

This feature has no annotations

SRVP18_trench_6_60cm_scaffold_5161_7
unknown

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comp(3367..5166)
DNA (1800bp) protein (600aa)
Fibronectin, type III domain protein n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AQZ5_PELPD
fibronectin type III domain-containing protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5161_8
unknown

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comp(5168..6862)
DNA (1695bp) protein (565aa)
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5161_9
unknown

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comp(6850..7407)
DNA (558bp) protein (186aa)
UPI0003D1AEA1 related cluster n=1 Tax=unknown RepID=UPI0003D1AEA1
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5161_10
unknown

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comp(7404..7934)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W750_UNCMA
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5161_11
unknown

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comp(8266..8748)
DNA (483bp) protein (161aa)
UPI0003D1A188 related cluster n=1 Tax=unknown RepID=UPI0003D1A188
50S ribosomal protein L11
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5161_12
unknown

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comp(8770..9240)
DNA (471bp) protein (157aa)
Transcription elongation factor Spt5 n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L0M7_METHD
ribosomal protein L24p/L26e, archaeal
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5161_13
unknown

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comp(9237..9437)
DNA (201bp) protein (67aa)
Protein translocase subunit SecE n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=SECE_METAC
secE; preprotein translocase subunit SecE
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5161_14
unknown

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10039..10833
DNA (795bp) protein (265aa)
50S ribosomal protein L3 n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MD98_9EURY
50S ribosomal protein L3P
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5161_15

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10844..11056
DNA (213bp) protein (71aa)
Ribosomal protein L3 suspected. See adjacent gene [SRVP18_trench_6_60cm_scaffold_5161_14].
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|SAAS:SAAS00023038}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl3p; 50S ribosomal protein L3P
50S ribosomal protein L3 n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=RL3_UNCMA
SRVP18_trench_6_60cm_scaffold_5161_16
unknown

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11061..11813
DNA (753bp) protein (251aa)
UPI0003D1C13E related cluster n=1 Tax=unknown RepID=UPI0003D1C13E
50S ribosomal protein L4P
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5161_17
unknown

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11810..12055
DNA (246bp) protein (82aa)
50S ribosomal protein L23P n=1 Tax=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) RepID=A3CSZ9_METMJ
50S ribosomal protein L23
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5161_18
unknown

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12080..12775
DNA (696bp) protein (232aa)
UPI0003D1C77A related cluster n=1 Tax=unknown RepID=UPI0003D1C77A
rpl2p; 50S ribosomal protein L2P
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5161_19

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12781..13194
DNA (414bp) protein (138aa)
30S ribosomal protein S19P n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XMQ8_METZD
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S19
SRVP18_trench_6_60cm_scaffold_5161_20
unknown

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13200..13646
DNA (447bp) protein (149aa)
50S ribosomal protein L22P n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=RL22_METBF
LSU ribosomal protein L17e (L22p)
Tax=RBG_16_Euryarchaeota_41_19_curated
SRVP18_trench_6_60cm_scaffold_5161_21
unknown

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13646..13867
DNA (222bp) protein (74aa)
30S ribosomal protein S3 n=1 Tax=uncultured archaeon GZfos35D7 RepID=Q649A8_9ARCH
rps3p; 30S ribosomal protein S3P
Tax=RBG_16_Euryarchaeota_41_19_curated
Displaying 21 items

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