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SW_10_UNK

In projects: SW_10  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.60 Longest contig: 134.98 Kbp Bin length: 42.41 Mbp GC content: 58.85 %
Contigs count: 17394 Features count: 56831 rRNAs count: 22 tRNAs count: 557

Genome completeness

megabin RP 51 / 55 MC: 46 BSCG 45 / 51 MC: 40 ASCG 38 / 38 MC: 37
Displaying items 701-750 of 17394 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_10_scaffold_18745
Species: Sporocytophaga myxococcoides (100%)
1 1046 bp 37.57 8.13 41.87
sw_10_scaffold_18250
Species: R_OD1_Kaiserbacteria_49_11 (100%)
1 1067 bp 48.17 5.62 41.89
sw_10_scaffold_11348
Species: Gloeocapsa sp. PCC 7428 (50%)
2 1475 bp 41.56 12.81 41.90
sw_10_scaffold_16530
Species: Halosimplex carlsbadense (50%)
2 1145 bp 59.30 11.35 41.92
sw_10_scaffold_23410 2 1424 bp 51.40 10.96 41.92
sw_10_scaffold_18967
Species: Natrialba hulunbeirensis (100%)
1 1037 bp 68.18 10.03 41.95
sw_10_scaffold_19507 1 1015 bp 70.15 37.34 41.97
sw_10_scaffold_3501 6 3098 bp 50.58 6.23 42.03
sw_10_scaffold_16082 1 1169 bp 39.44 4.88 42.09
sw_10_scaffold_5818
Species: Salinibacter ruber (50%)
2 2751 bp 61.65 16.87 42.09
sw_10_scaffold_13081
Species: Ectocarpus siliculosus (50%)
2 1346 bp 61.29 5.72 42.12
sw_10_scaffold_15182
Species: Natronomonas moolapensis (100%)
2 2008 bp 62.90 24.80 42.13
sw_10_scaffold_7562
Species: RIFOXYA2_FULL_Berkelbacteria_43_10_curated (100%)
1 1922 bp 46.88 5.72 42.14
sw_10_scaffold_15200
Species: Lyngbya confervoides (100%)
1 1216 bp 38.24 6.74 42.19
sw_10_scaffold_10552 2 1550 bp 43.16 5.03 42.19
sw_10_scaffold_34281 2 1201 bp 49.71 4.00 42.21
sw_10_scaffold_35446
Species: halophilic archaeon DL31 (50%)
2 1229 bp 67.37 12.37 42.23
sw_10_scaffold_11885
Species: Flavihumibacter solisilvae (50%)
2 2937 bp 45.90 4.63 42.29
sw_10_scaffold_12661 2 1376 bp 45.42 6.90 42.30
sw_10_scaffold_15809 1 1184 bp 53.04 7.26 42.31
sw_10_scaffold_10110
Class: Halobacteria (60%)
5 3828 bp 65.94 10.34 42.32
sw_10_scaffold_11362
Species: Haloquadratum walsbyi (100%)
1 1474 bp 62.35 16.28 42.33
sw_10_scaffold_16083
Species: Haloarcula vallismortis (50%)
2 1169 bp 67.49 10.01 42.34
sw_10_scaffold_11452
Species: Salinibacter ruber (100%)
1 1466 bp 56.00 8.87 42.36
sw_10_scaffold_4357 5 2709 bp 39.09 10.56 42.41
sw_10_scaffold_13072 3 2065 bp 51.43 5.67 42.42
sw_10_scaffold_12519
Species: Natronomonas pharaonis (100%)
1 1386 bp 70.20 30.74 42.42
sw_10_scaffold_5971
Domain: Bacteria (71.43%)
7 4977 bp 35.52 5.87 42.44
sw_10_scaffold_26582
Species: Mesorhizobium loti (50%)
2 1468 bp 46.73 5.72 42.51
sw_10_scaffold_19295
Species: Treponema saccharophilum (50%)
2 1023 bp 50.24 6.16 42.52
sw_10_scaffold_12974
Species: Halobiforma lacisalsi (50%)
2 1354 bp 53.55 9.68 42.54
sw_10_scaffold_13971
Class: Halobacteria (66.67%)
3 2058 bp 59.52 53.26 42.57
sw_10_scaffold_5879 3 2844 bp 50.60 5.77 42.62
sw_10_scaffold_9687
Species: Cyanothece sp. CCY0110 (100%)
1 1637 bp 46.24 16.62 42.70
sw_10_scaffold_20338
Species: Halorubrum kocurii (50%)
2 1678 bp 49.40 5.01 42.73
sw_10_scaffold_14909
Species: Natronomonas moolapensis (66.67%)
3 1810 bp 55.97 22.08 42.76
sw_10_scaffold_18612 2 1052 bp 52.76 7.22 42.78
sw_10_scaffold_7533
Species: Natronomonas pharaonis (100%)
2 2403 bp 69.70 106.45 42.82
sw_10_scaffold_10419 4 1562 bp 35.40 5.57 42.83
sw_10_scaffold_15633 3 1940 bp 34.07 4.54 42.84
sw_10_scaffold_16778
Species: RBG_13_Bacteroidetes_43_22_curated (50%)
2 1133 bp 34.42 6.00 42.90
sw_10_scaffold_17222 2 1112 bp 52.79 7.37 42.90
sw_10_scaffold_14250 2 1272 bp 18.47 10.30 42.92
sw_10_scaffold_17097 1 1118 bp 38.01 36.05 42.93
sw_10_scaffold_30222 3 1306 bp 65.31 71.44 42.96
sw_10_scaffold_7896
Species: Selaginella moellendorffii (100%)
1 1871 bp 50.29 5.24 42.97
sw_10_scaffold_17607
Species: Haladaptatus paucihalophilus (50%)
2 1096 bp 60.22 7.66 42.97
sw_10_scaffold_19223
Species: Rhodothermus marinus (50%)
2 1026 bp 35.09 4.29 42.98
sw_10_scaffold_6896
Species: Myxococcus fulvus (50%)
2 2038 bp 49.12 6.72 42.98
sw_10_scaffold_28373 3 1277 bp 61.16 35.08 42.99
Displaying items 701-750 of 17394 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.