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sw_10_scaffold_303

Search features with annotation key words

Displaying 18 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_10_scaffold_303_1
Thermococcus sp. AM4, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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342..1592
DNA (1251bp) protein (417aa)
Permease, major facilitator superfamily n=1 Tax=Thermococcus sp. AM4 RepID=B7R1N4_9EURY
major facilitator superfamily permease
Permease, major facilitator superfamily {ECO:0000313|EMBL:EEB74414.1}; TaxID=246969 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus
sw_10_scaffold_303_2
unknown

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1866..2399
DNA (534bp) protein (178aa)

This feature has no annotations

sw_10_scaffold_303_3
unknown

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2396..2623
DNA (228bp) protein (76aa)

This feature has no annotations

sw_10_scaffold_303_4
unknown

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2627..2965
DNA (339bp) protein (113aa)

This feature has no annotations

sw_10_scaffold_303_5
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(3073..3963)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0NBB8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA54389.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
hypothetical protein
sw_10_scaffold_303_trna_3
unknown

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comp(4730..4803)
DNA (74bp)
transferRNA
sw_10_scaffold_303_6
Nocardiopsis dassonvillei, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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5067..5744
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 / JCM 7437 / NCTC 10488) RepID=D7AZV0_NOCDD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH68221.1}; Flags: Precursor;; TaxID=446468 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis das
sw_10_scaffold_303_trna_2
unknown

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comp(6232..6305)
DNA (74bp)
transferRNA
sw_10_scaffold_303_7
RBG_13_Euryarchaeota_31_8_curated, Euryarchaeota, Archaea

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comp(6365..7903)
DNA (1539bp) protein (513aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VQ53_9EURY
hypothetical protein Tax=RBG_13_Euryarchaeota_31_8_curated
sw_10_scaffold_303_8

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comp(7954..8112)
DNA (159bp) protein (53aa)
50S ribosomal protein L37e n=2 Tax=Haloterrigena RepID=D2RY48_HALTV
50S ribosomal protein L37e {ECO:0000256|HAMAP-Rule:MF_00547, ECO:0000256|SAAS:SAAS00257304}; TaxID=1456589 species="Archaea; Euryarchaeota; environmental samples.;" source="uncultured marine group II/
ribosomal protein L37e
sw_10_scaffold_303_9
BJP_IG2158_Thermoplasmatales_53_16, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(8125..8373)
DNA (249bp) protein (83aa)
Putative snRNP Sm-like protein n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E9P3_METMS
Small nuclear ribonucleoprotein, LSM family
Tax=BJP_IG2158_Thermoplasmatales_53_16
sw_10_scaffold_303_10

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comp(8737..10329)
DNA (1593bp) protein (531aa)
1-pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12)
1-pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:AEN04813.1}; EC=1.5.1.12 {ECO:0000313|EMBL:AEN04813.1};; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
1-pyrroline-5-carboxylate dehydrogenase n=1 Tax=halophilic archaeon DL31 RepID=G2MIN2_9ARCH
sw_10_scaffold_303_11
R_Deltaproteobacteria_44_16, Deltaproteobacteria, Proteobacteria, Bacteria

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10483..12018
DNA (1536bp) protein (512aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_44_16_curated
Aldehyde dehydrogenase (NAD) family protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8F9X8_9DELT
pcd; piperideine-6-carboxylate dehydrogenase
sw_10_scaffold_303_12
unknown

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12306..12569
DNA (264bp) protein (88aa)

This feature has no annotations

sw_10_scaffold_303_13
BJP_IG2158_Thermoplasmatales_53_16, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(12882..13532)
DNA (651bp) protein (217aa)
30S ribosomal protein S2 n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000360F358
rps2; 30S ribosomal protein S2
Tax=BJP_IG2158_Thermoplasmatales_53_16
Bac and Arch Kari Finstad (2/5/15)
sw_10_scaffold_303_14
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(13534..14742)
DNA (1209bp) protein (403aa)
eno; enolase (EC:4.2.1.11)
Enolase n=1 Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7LJ04_METBM
enolase Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
sw_10_scaffold_303_15
Thermofilum sp. 1807-2, Thermofilum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(14747..14998)
DNA (252bp) protein (84aa)
DNA-directed RNA polymerase subunit K {ECO:0000313|EMBL:AKG39250.1}; TaxID=1550241 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermofilaceae; Thermofilum.;" source="Thermofilum sp
RNA polymerase Rpb6
sw_10_scaffold_303_trna_1
unknown

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comp(15538..15622)
DNA (85bp)
transferRNA
Displaying 18 items

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