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sw_10_scaffold_48

Search features with annotation key words

Displaying items 1-30 of 71 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_10_scaffold_48_1
unknown

Not on your lists

1..453
DNA (453bp) protein (151aa)

This feature has no annotations

sw_10_scaffold_48_2
Halorubrum lacusprofundi, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

450..2075
DNA (1626bp) protein (542aa)
PKD domain containing protein n=1 Tax=Candidatus Haloredivivus sp. G17 RepID=H0AAD3_9EURY
PKD domain containing protein
PKD domain containing protein {ECO:0000313|EMBL:ACM58390.1}; TaxID=416348 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum lacusprofundi (
sw_10_scaffold_48_3

Not on your lists

comp(2174..3115)
DNA (942bp) protein (314aa)
Deoxyhypusine synthase (Dys1) {ECO:0000313|EMBL:AIF07150.1}; EC=2.5.1.46 {ECO:0000313|EMBL:AIF07150.1};; TaxID=1457974 species="Archaea; Euryarchaeota; environmental samples.;" source="uncultured mari
deoxyhypusine synthase (EC:2.5.1.46)
Probable deoxyhypusine synthase n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T560_9EURY
sw_10_scaffold_48_4
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(3112..4251)
DNA (1140bp) protein (380aa)
aspartate aminotransferase (EC:2.6.1.1) Tax=RBG_16_Euryarchaeota_67_27_curated
Aspartate/tyrosine/aromatic aminotransferase (EC:2.6.1.1)
Aspartate/tyrosine/aromatic aminotransferase n=1 Tax=Thermoplasmatales archaeon BRNA1 RepID=M4YJ82_9EURY
sw_10_scaffold_48_5
unknown

Not on your lists

4276..4989
DNA (714bp) protein (238aa)

This feature has no annotations

sw_10_scaffold_48_6
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

5084..5857
DNA (774bp) protein (258aa)
beta-lactamase domain-containing protein; K00784 ribonuclease Z [EC:3.1.26.11] Tax=RBG_16_Armatimonadetes_67_12_curated
Beta-lactamase domain protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UQV7_ROSS1
beta-lactamase domain-containing protein
sw_10_scaffold_48_7
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(7072..8391)
DNA (1320bp) protein (440aa)
truD; tRNA pseudouridine synthase D (EC:5.4.99.-) Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Probable tRNA pseudouridine synthase D n=1 Tax=Thermoplasmatales archaeon BRNA1 RepID=M4YNZ1_9EURY
conserved hypothetical protein TIGR00094
sw_10_scaffold_48_8
Methanobacterium paludis, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(8396..8674)
DNA (279bp) protein (93aa)
DNA-directed RNA polymerase subunit L {ECO:0000256|HAMAP-Rule:MF_00261}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00261};; TaxID=868131 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriale
DNA-directed RNA polymerase subunit L n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D509_METSW
DNA-directed RNA polymerase subunit L
sw_10_scaffold_48_9
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(8688..9362)
DNA (675bp) protein (225aa)
RNA-binding protein, containing S1 domain n=2 Tax=Euryarchaeota RepID=M9SH91_9EURY
RNA-binding protein, containing S1 domain Tax=RBG_16_Euryarchaeota_68_12_curated
RNA-binding protein, containing S1 domain
sw_10_scaffold_48_10
BJP_IG2158_Thermoplasmatales_53_16, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(10040..10648)
DNA (609bp) protein (203aa)
Possible protein methyltransferase n=1 Tax=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) RepID=O27940_METTH
ribosomal L11 methyltransferase
Tax=BJP_IG2158_Thermoplasmatales_53_16
sw_10_scaffold_48_11
RBG_13_Euryarchaeota_31_8_curated, Euryarchaeota, Archaea

Not on your lists

comp(10649..11080)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00038031A5
hypothetical protein Tax=RBG_13_Euryarchaeota_31_8_curated
hypothetical protein
sw_10_scaffold_48_12
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(11342..12469)
DNA (1128bp) protein (376aa)
Chaperone protein DnaJ n=1 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WQC7_METH6
Chaperone protein DnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152}; TaxID=1110509 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta haru
sw_10_scaffold_48_13
Halorubrum terrestre, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(12516..14486)
DNA (1971bp) protein (657aa)
dnaK; molecular chaperone DnaK (EC:1.3.1.74)
Chaperone protein DnaK n=1 Tax=Halorubrum terrestre JCM 10247 RepID=M0CYF9_9EURY
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP
sw_10_scaffold_48_14
Natronococcus amylolyticus, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14625..16175)
DNA (1551bp) protein (517aa)
AMP-dependent synthetase and ligase n=1 Tax=Natronococcus jeotgali DSM 18795 RepID=L9WUC9_9EURY
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ELY58121.1}; TaxID=1227497 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.;" source="Natronococcus amyl
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
sw_10_scaffold_48_15
unknown

Not on your lists

16300..16746
DNA (447bp) protein (149aa)

This feature has no annotations

sw_10_scaffold_48_16
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16757..17269)
DNA (513bp) protein (171aa)
Acetyl/propionyl-CoA carboxylase, alpha subunit n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0DK70_9EURY
Acetyl/propionyl-CoA carboxylase, alpha subunit {ECO:0000313|EMBL:ELZ35097.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Ha
pyc; pyruvate carboxylase
sw_10_scaffold_48_17
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(17266..19254)
DNA (1989bp) protein (663aa)
Pyruvate carboxyl transferase subunit A {ECO:0000313|EMBL:AKB26216.1}; EC=6.4.1.1 {ECO:0000313|EMBL:AKB26216.1};; TaxID=1434100 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Met
Pyruvate carboxylase subunit A n=2 Tax=Methanosarcina barkeri RepID=Q46C58_METBF
Pyruvate carboxyl transferase subunit A
sw_10_scaffold_48_18
Haloferax gibbonsii, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19293..21470)
DNA (2178bp) protein (726aa)
Copper-binding protein n=1 Tax=Haloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4) RepID=I3R4P1_HALMT
copper-binding protein
Copper-binding protein {ECO:0000313|EMBL:ELZ79907.1}; TaxID=1227459 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax gibbonsii ATCC 33959.;"
sw_10_scaffold_48_19
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21460..22509)
DNA (1050bp) protein (350aa)
PKD domain containing protein n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C072_BEUC1
PKD domain-containing protein
PKD domain containing protein {ECO:0000313|EMBL:ACQ79258.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC
sw_10_scaffold_48_20
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(22506..27071)
DNA (4566bp) protein (1522aa)
thermitase (EC:3.4.21.66)
Serine protease halolysin R4 n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0M4U5_HALMO
Serine protease halolysin R4 {ECO:0000313|EMBL:EMA39639.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM
sw_10_scaffold_48_21

Not on your lists

comp(27068..28480)
DNA (1413bp) protein (471aa)
hypothetical protein
Marine sediment metagenome DNA, contig: S01H1_L01015 {ECO:0000313|EMBL:GAF73593.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
sw_10_scaffold_48_22
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

comp(28705..29229)
DNA (525bp) protein (175aa)
Putative uncharacterized protein Tax=CG_Aenigma_01
sw_10_scaffold_48_23
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

comp(29226..29510)
DNA (285bp) protein (95aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JET8_9ARCH
hypothetical protein
Tax=CG_Aenigma_01
sw_10_scaffold_48_24
unknown

Not on your lists

comp(30171..30545)
DNA (375bp) protein (125aa)

This feature has no annotations

sw_10_scaffold_48_25
unknown

Not on your lists

comp(30615..31046)
DNA (432bp) protein (144aa)

This feature has no annotations

sw_10_scaffold_48_26
Halorubrum coriense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

31118..31543
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Halorubrum coriense DSM 10284 RepID=M0EBX7_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ43919.1}; TaxID=1227466 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum coriense DSM 10284.;
ArsR family transcriptional regulator
sw_10_scaffold_48_27
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

32595..33506
DNA (912bp) protein (304aa)
ABC-type multidrug transport system, ATPase component id=3465719 bin=GWC2_Chloroflexi_73_18 species=Saccharomonospora marina genus=Saccharomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
ABC-type multidrug transporter, ATPase component; K09687 antibiotic transport system ATP-binding protein Tax=GWC2_RIF_CHLX_73_18_curated
ABC transporter-like protein
sw_10_scaffold_48_28
unknown

Not on your lists

33503..34255
DNA (753bp) protein (251aa)

This feature has no annotations

sw_10_scaffold_48_29
unknown

Not on your lists

34252..35838
DNA (1587bp) protein (529aa)

This feature has no annotations

sw_10_scaffold_48_30
Kitasatospora griseola, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35899..36648)
DNA (750bp) protein (250aa)
ABC-2 type transporter n=1 Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y554_THEBD
Kitasatospora griseola strain MF730-N6 RKJC_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ63085.1}; TaxID=2064 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatos
ABC transporter
Displaying items 1-30 of 71 in total

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