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sw_10_scaffold_56

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_10_scaffold_56_1
unknown

Not on your lists

1..174
DNA (174bp) protein (58aa)

This feature has no annotations

sw_10_scaffold_56_2
Stanieria cyanosphaera, Stanieria, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

comp(784..1287)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Stanieria cyanosphaera (strain ATCC 29371 / PCC 7437) RepID=K9XYY7_STAC7
Protein of unknown function DUF2243, membrane
Uncharacterized protein {ECO:0000313|EMBL:AFZ36887.1}; TaxID=111780 species="Bacteria; Cyanobacteria; Pleurocapsales; Stanieria.;" source="Stanieria cyanosphaera (strain ATCC 29371 / PCC 7437).;"
sw_10_scaffold_56_3
Stanieria cyanosphaera, Stanieria, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

comp(1302..2081)
DNA (780bp) protein (260aa)
Photosystem II S4 domain protein n=1 Tax=Stanieria cyanosphaera (strain ATCC 29371 / PCC 7437) RepID=K9XQ09_STAC7
photosystem II S4 domain protein
Photosystem II S4 domain protein {ECO:0000313|EMBL:AFZ34179.1}; TaxID=111780 species="Bacteria; Cyanobacteria; Pleurocapsales; Stanieria.;" source="Stanieria cyanosphaera (strain ATCC 29371 / PCC 7437
sw_10_scaffold_56_4
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(2124..2639)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WF75_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ18424.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
sw_10_scaffold_56_5
Aphanothece halophytica, Aphanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

3013..4593
DNA (1581bp) protein (527aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase n=2 Tax=Chroococcales RepID=K9YE73_HALP7
3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:BAF91727.1}; TaxID=72020 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Aphanothece.;" source="Aphanothece halophytica.;"
sw_10_scaffold_56_6
unknown

Not on your lists

4876..5115
DNA (240bp) protein (80aa)

This feature has no annotations

sw_10_scaffold_56_7
Halothece sp. PCC 7418, Halothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

5373..6263
DNA (891bp) protein (297aa)
(50S ribosomal protein L11P)-lysine N-methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_0073
Ribosomal protein L11 methyltransferase n=1 Tax=Halothece sp. (strain PCC 7418) RepID=K9YCV3_HALP7
sw_10_scaffold_56_8
Neosynechococcus sphagnicola, Neosynechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(6272..6877)
DNA (606bp) protein (202aa)
Guanosine polyphosphate synthetase/pyrophosphohydrolase n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) RepID=K9RS28_SYNP3
Phosphohydrolase {ECO:0000313|EMBL:KGF72442.1}; TaxID=1497020 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Neosynechococcus.;" source="Neosynechococcus sphagnicola sy1.;"
guanosine polyphosphate synthetase/pyrophosphohydrolase
sw_10_scaffold_56_9
Coleofasciculus chthonoplastes, Coleofasciculus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

7721..8152
DNA (432bp) protein (144aa)
Putative uncharacterized protein n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4VT48_9CYAN
Putative uncharacterized protein {ECO:0000313|EMBL:EDX75004.1}; TaxID=118168 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Coleofasciculus.;" source="Coleofasciculus chthon
hypothetical protein
sw_10_scaffold_56_10
Crinalium epipsammum, Crinalium, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

8158..8901
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI00034B8BD3
glycerophosphoryl diester phosphodiesterase
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:AFZ14582.1}; TaxID=1173022 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Crinalium.;" source="Crinalium epipsa
sw_10_scaffold_56_11
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(9062..9889)
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9W991_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ16803.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
sw_10_scaffold_56_12
Microcoleus vaginatus, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(10011..11162)
DNA (1152bp) protein (384aa)
Glutamate/cysteine ligase n=1 Tax=Microcoleus vaginatus FGP-2 RepID=F5UC40_9CYAN
glutamate/cysteine ligase
Glutamate/cysteine ligase {ECO:0000313|EMBL:EGK90756.1}; TaxID=756067 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus vaginatus FGP-2.;"
sw_10_scaffold_56_13
Coleofasciculus chthonoplastes, Coleofasciculus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(11274..12191)
DNA (918bp) protein (306aa)
Histone deacetylase family, putative n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4VSA9_9CYAN
Histone deacetylase family, putative {ECO:0000313|EMBL:EDX75275.1}; TaxID=118168 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Coleofasciculus.;" source="Coleofasciculus ch
deacetylase
sw_10_scaffold_56_14
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12288..12950)
DNA (663bp) protein (221aa)
Tat (Twin-arginine translocation) pathway signal sequence n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJA7_AFIFE
Tat (Twin-arginine translocation) pathway signal sequence {ECO:0000313|EMBL:EKS30387.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;"
hypothetical protein
sw_10_scaffold_56_15
Pleurocapsa minor, Pleurocapsa, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

comp(13114..14394)
DNA (1281bp) protein (427aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000
Serine--tRNA ligase n=1 Tax=Pleurocapsa sp. PCC 7327 RepID=K9T5Z3_9CYAN
sw_10_scaffold_56_16
Pleurocapsa minor, Pleurocapsa, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

comp(14498..15052)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Pleurocapsa sp. PCC 7327 RepID=K9T302_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY76414.1}; TaxID=118163 species="Bacteria; Cyanobacteria; Pleurocapsales; Pleurocapsa.;" source="Pleurocapsa sp. PCC 7327.;"
sw_10_scaffold_56_17
Rubidibacter lacunae, Rubidibacter, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

15843..16196
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI00037AF369
Putative transcriptional regulator {ECO:0000313|EMBL:ERN40742.1}; TaxID=582515 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Rubidibacter.;" source="Rubidibacter lacunae KORD
PadR family transcriptional regulator
sw_10_scaffold_56_18
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

16263..16919
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WI16_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ19424.1}; Flags: Precursor;; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp.
sw_10_scaffold_56_19
Rubidibacter lacunae, Rubidibacter, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(17038..17358)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Spirulina subsalsa RepID=UPI00030B5FA6
Uncharacterized protein {ECO:0000313|EMBL:ERN40384.1}; TaxID=582515 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Rubidibacter.;" source="Rubidibacter lacunae KORDI 51-2.;"
hypothetical protein
sw_10_scaffold_56_20
Halothece sp. PCC 7418, Halothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

17885..19189
DNA (1305bp) protein (435aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=65093 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Halothece cluster; H
GAF sensor signal transduction histidine kinase n=1 Tax=Halothece sp. (strain PCC 7418) RepID=K9YH91_HALP7
GAF sensor signal transduction histidine kinase
sw_10_scaffold_56_21
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(19473..20192)
DNA (720bp) protein (240aa)
Putative S-layer protein n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WHY2_9CYAN
S-layer protein
Putative S-layer protein {ECO:0000313|EMBL:AFZ19421.1}; Flags: Precursor;; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp
sw_10_scaffold_56_22
Crinalium epipsammum, Crinalium, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(20152..20616)
DNA (465bp) protein (155aa)
S-layer domain-containing protein n=1 Tax=Crinalium epipsammum PCC 9333 RepID=K9VUG7_9CYAN
S-layer protein
S-layer domain-containing protein {ECO:0000313|EMBL:AFZ11209.1}; Flags: Precursor;; TaxID=1173022 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Crinalium.;" source="Crinali
sw_10_scaffold_56_23
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(21264..21947)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WFA8_9CYAN
dehydrogenase
Uncharacterized protein {ECO:0000313|EMBL:AFZ18908.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
sw_10_scaffold_56_24
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(22338..23891)
DNA (1554bp) protein (518aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Osc
Ribosomal RNA small subunit methyltransferase RsmB n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WI11_9CYAN
ribosomal RNA small subunit methyltransferase RsmB
sw_10_scaffold_56_25
Cyanothece sp. CCY0110, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

23969..28453
DNA (4485bp) protein (1495aa)
Two-component hybrid sensor and regulator n=1 Tax=Cyanothece sp. CCY0110 RepID=A3ITQ2_9CHRO
Two-component hybrid sensor and regulator {ECO:0000313|EMBL:EAZ90118.1}; TaxID=391612 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. CCY01
PAS domain-containing protein
sw_10_scaffold_56_26
RLO_PLX_64_10, Bacteria

Not on your lists

28546..28998
DNA (453bp) protein (151aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ACL0_9PROT
response regulator receiver protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
sw_10_scaffold_56_27
Cyanothece sp. CCY0110, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

29115..31052
DNA (1938bp) protein (646aa)
hypothetical protein n=1 Tax=filamentous cyanobacterium ESFC-1 RepID=UPI00036BE669
Two-component hybrid sensor and regulator {ECO:0000313|EMBL:EAZ90119.1}; TaxID=391612 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. CCY01
PAS/PAC sensor hybrid histidine kinase
sw_10_scaffold_56_28
Halothece sp. PCC 7418, Halothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(31229..31429)
DNA (201bp) protein (67aa)
Glutamine synthetase inactivating factor IF7 n=1 Tax=Halothece sp. (strain PCC 7418) RepID=K9YH60_HALP7
glutamine synthetase
Glutamine synthetase inactivating factor IF7 {ECO:0000313|EMBL:AFZ45710.1}; TaxID=65093 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Halothece cluster; Halothece.;" source="
sw_10_scaffold_56_29
Halothece sp. PCC 7418, Halothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

31680..32363
DNA (684bp) protein (228aa)
Endonuclease/exonuclease/phosphatase n=2 Tax=Chroococcales RepID=K9YFW0_HALP7
endonuclease/exonuclease/phosphatase
Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:AFZ44988.1}; TaxID=65093 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Halothece cluster; Halothece.;" source="Halothec
Displaying 29 items

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