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SW_10_Oscillatoriophycideae_48_33

In projects: SW_10

Consensus taxonomy: Oscillatoriophycideae  →  Cyanobacteria  →  Bacteria

Taxonomy override: Cyanobacteria

Metagenomic Context

Parent: SW_10_UNK

Properties

Avg. coverage: 33.01 Longest contig: 74.35 Kbp Bin length: 3.61 Mbp GC content: 48.20 %
Contigs count: 239 Features count: 3517 rRNAs count: 1 tRNAs count: 40

Genome completeness

near complete RP 49 / 55 MC: 3 BSCG 49 / 51 MC: 1 ASCG 11 / 38
Displaying items 101-150 of 239 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_10_scaffold_20
Class: Oscillatoriophycideae (70.59%)
34 42773 bp 48.74 32.50 80.21
sw_10_scaffold_626
Class: Oscillatoriophycideae (54.55%)
11 14331 bp 49.23 32.52 77.98
sw_10_scaffold_36
Class: Oscillatoriophycideae (60.42%)
48 36497 bp 49.56 32.54 82.96
sw_10_scaffold_445
Class: Oscillatoriophycideae (70%)
10 10705 bp 49.37 32.58 74.49
sw_10_scaffold_1
Class: Oscillatoriophycideae (57.63%)
59 67425 bp 49.18 32.58 81.85
sw_10_scaffold_3296
Species: Crinalium epipsammum (50%)
2 3197 bp 46.86 32.59 73.66
sw_10_scaffold_142
Phylum: Cyanobacteria (75%)
16 20020 bp 49.13 32.61 82.19
sw_10_scaffold_96
Class: Oscillatoriophycideae (60.53%)
38 39615 bp 49.33 32.62 80.44
sw_10_scaffold_2241
Order: Oscillatoriales (50%)
8 6363 bp 48.31 32.64 78.97
sw_10_scaffold_112
Class: Oscillatoriophycideae (50%)
28 27176 bp 48.24 32.65 77.55
sw_10_scaffold_397
Phylum: Cyanobacteria (83.33%)
12 11526 bp 47.41 32.67 85.66
sw_10_scaffold_2797
Class: Oscillatoriophycideae (50%)
6 6862 bp 49.15 32.67 88.92
sw_10_scaffold_321
Class: Oscillatoriophycideae (68.42%)
19 23820 bp 48.48 32.67 79.65
sw_10_scaffold_374
Phylum: Cyanobacteria (84.62%)
13 11803 bp 48.96 32.71 77.70
sw_10_scaffold_203
Class: Oscillatoriophycideae (87.5%)
16 17081 bp 49.01 32.73 85.71
sw_10_scaffold_189
Phylum: Cyanobacteria (78.26%)
23 20890 bp 47.68 32.78 83.21
sw_10_scaffold_197
Order: Oscillatoriales (70.83%)
24 27889 bp 48.14 32.81 82.09
sw_10_scaffold_1060
Species: Microcoleus sp. PCC 7113 (50%)
6 6410 bp 49.88 32.81 82.09
sw_10_scaffold_946
Order: Oscillatoriales (62.5%)
8 6853 bp 46.36 32.85 71.75
sw_10_scaffold_723
Phylum: Cyanobacteria (66.67%)
6 8071 bp 46.19 32.85 74.67
sw_10_scaffold_160
Phylum: Cyanobacteria (57.89%)
19 19115 bp 48.16 32.89 84.67
sw_10_scaffold_3216
Order: Oscillatoriales (75%)
4 3245 bp 50.20 32.97 84.31
sw_10_scaffold_487
Class: Oscillatoriophycideae (61.54%)
13 15502 bp 48.46 33.00 73.93
sw_10_scaffold_689
Class: Oscillatoriophycideae (57.14%)
7 8245 bp 50.12 33.01 77.79
sw_10_scaffold_40
Class: Oscillatoriophycideae (56.1%)
41 46458 bp 48.85 33.04 83.53
sw_10_scaffold_76
Class: Oscillatoriophycideae (53.33%)
30 29189 bp 50.03 33.05 82.47
sw_10_scaffold_1412
Class: Oscillatoriophycideae (60%)
10 9186 bp 47.37 33.07 62.18
sw_10_scaffold_280
Order: Oscillatoriales (53.33%)
15 16775 bp 47.40 33.09 77.34
sw_10_scaffold_186
Class: Oscillatoriophycideae (56.25%)
32 29542 bp 48.72 33.10 80.62
sw_10_scaffold_248
Class: Oscillatoriophycideae (57.14%)
14 15061 bp 47.36 33.11 80.53
sw_10_scaffold_226
Class: Oscillatoriophycideae (58.82%)
17 16175 bp 47.83 33.17 75.52
sw_10_scaffold_992
Class: Oscillatoriophycideae (50%)
6 6675 bp 47.60 33.18 82.34
sw_10_scaffold_319
Class: Oscillatoriophycideae (58.82%)
17 14213 bp 48.24 33.18 66.24
sw_10_scaffold_19
Class: Oscillatoriophycideae (54.69%)
64 74352 bp 48.82 33.21 81.54
sw_10_scaffold_132
Phylum: Cyanobacteria (88.89%)
18 22520 bp 48.22 33.23 79.96
sw_10_scaffold_65
Class: Oscillatoriophycideae (62.75%)
51 47179 bp 48.22 33.31 78.80
sw_10_scaffold_199
Order: Oscillatoriales (60.71%)
28 28570 bp 48.93 33.33 81.51
sw_10_scaffold_158
Class: Oscillatoriophycideae (72.22%)
18 19200 bp 47.95 33.34 81.17
sw_10_scaffold_697
Phylum: Cyanobacteria (77.78%)
9 8188 bp 46.92 33.41 78.19
sw_10_scaffold_128
Class: Oscillatoriophycideae (58.33%)
24 21993 bp 47.80 33.45 73.52
sw_10_scaffold_2729
Order: Nostocales (75%)
4 3559 bp 47.85 33.46 67.43
sw_10_scaffold_800
Order: Chroococcales (62.5%)
8 7607 bp 49.35 33.50 65.86
sw_10_scaffold_141
Order: Oscillatoriales (50%)
16 20188 bp 48.89 33.51 83.28
sw_10_scaffold_1206
Phylum: Cyanobacteria (88.89%)
9 5998 bp 48.00 33.51 80.39
sw_10_scaffold_746
Phylum: Cyanobacteria (86.67%)
15 15353 bp 47.91 33.56 77.89
sw_10_scaffold_176
Order: Oscillatoriales (60%)
20 18474 bp 47.17 33.60 69.91
sw_10_scaffold_133
Class: Oscillatoriophycideae (50%)
18 21085 bp 47.10 33.64 78.33
sw_10_scaffold_1024
Phylum: Cyanobacteria (50%)
6 6559 bp 45.53 33.66 81.32
sw_10_scaffold_18
Order: Oscillatoriales (50%)
36 43184 bp 48.44 33.68 85.55
sw_10_scaffold_1061
Phylum: Cyanobacteria (85.71%)
7 6409 bp 45.78 33.69 67.83
Displaying items 101-150 of 239 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.