ggKbase | organisms

Consensus taxonomy: Bacteroidetes → Bacteria

Metagenomic Context

Parent: SW_10_UNK

Properties

Avg. coverage: 5.33 Longest contig: 11.36 Kbp Bin length: 1.08 Mbp GC content: 39.90 %

Contigs count: 499 Features count: 1322 rRNAs count: 0 tRNAs count: 9

Genome completeness

partial RP 37 / 55 MC: 5 BSCG 36 / 51 MC: 5 ASCG 8 / 38

Displaying items 201-250 of 499 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_10_scaffold_12527 Phylum: Bacteroidetes (66.67%)	3	1385 bp	38.48	5.49	71.91
sw_10_scaffold_4337 Order: Flavobacteriales (66.67%)	3	4230 bp	38.16	4.94	78.79
sw_10_scaffold_9869 Species: Haliscomenobacter hydrossis (66.67%)	3	3159 bp	39.92	4.65	79.58
sw_10_scaffold_14837 Phylum: Bacteroidetes (100%)	3	1762 bp	43.53	3.97	92.45
sw_10_scaffold_3910 Phylum: Bacteroidetes (66.67%)	3	2899 bp	39.22	6.04	79.99
sw_10_scaffold_13224 Order: Cytophagales (66.67%)	3	2250 bp	43.60	5.42	90.80
sw_10_scaffold_5724 Phylum: Bacteroidetes (66.67%)	3	2280 bp	37.98	5.39	87.37
sw_10_scaffold_8952 Order: Cytophagales (66.67%)	3	3097 bp	41.59	5.23	90.38
sw_10_scaffold_10000 Species: RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated (50%)	2	1602 bp	38.45	4.56	42.70
sw_10_scaffold_9415 Species: Algibacter lectus (50%)	2	1666 bp	41.06	4.44	75.99
sw_10_scaffold_15073 Species: RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated (50%)	2	1223 bp	42.35	7.44	61.57
sw_10_scaffold_19682 Species: Fulvivirga imtechensis (50%)	2	1007 bp	42.11	5.06	72.39
sw_10_scaffold_19222 Species: BJP_IG2103_Bacteroidetes_41_9 (50%)	2	1026 bp	41.52	5.65	93.86
sw_10_scaffold_34149 Species: Flavobacterium cauense (50%)	2	1212 bp	40.02	5.28	82.67
sw_10_scaffold_11852 Species: Pseudopedobacter saltans (50%)	2	1437 bp	40.36	5.29	89.35
sw_10_scaffold_11623 Species: Flammeovirgaceae bacterium 311 (50%)	2	1454 bp	38.24	5.09	85.21
sw_10_scaffold_12318 Species: GWD2_Bacteroidetes_33_33_curated (50%)	2	2075 bp	37.93	6.60	62.31
sw_10_scaffold_13700 Species: Microscilla marina (50%)	2	1305 bp	42.07	3.60	63.68
sw_10_scaffold_15314 Species: Prevotella sp. CAG:873 (50%)	2	1210 bp	40.41	6.03	83.55
sw_10_scaffold_13010 Species: Owenweeksia hongkongensis (100%)	2	1351 bp	39.38	6.37	81.94
sw_10_scaffold_15317 Species: Fulvivirga imtechensis (50%)	2	1210 bp	38.84	5.12	95.95
sw_10_scaffold_8278 Species: RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated (50%)	2	2418 bp	39.58	5.96	90.94
sw_10_scaffold_11401 Species: Flexibacter litoralis (50%)	2	1470 bp	39.18	4.83	80.00
sw_10_scaffold_16033 Species: RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated (50%)	2	1172 bp	42.06	4.44	60.67
sw_10_scaffold_16034 Species: Haliscomenobacter hydrossis (50%)	2	1172 bp	38.65	4.44	64.25
sw_10_scaffold_8512 Species: Pedobacter kyungheensis (50%)	2	1783 bp	37.86	4.21	81.77
sw_10_scaffold_10714 Species: GWF2_Bacteroidetes_43_11_curated (50%)	2	1533 bp	40.51	4.31	98.04
sw_10_scaffold_10024 Species: Pedobacter sp. BAL39 (50%)	2	1600 bp	39.56	4.44	99.75
sw_10_scaffold_13484 Species: uncultured Flavobacteriia bacterium (50%)	2	1319 bp	42.08	4.17	90.07
sw_10_scaffold_23050 Species: Haliscomenobacter hydrossis (50%)	2	1511 bp	42.03	6.35	56.58
sw_10_scaffold_11873 Species: Microscilla marina (50%)	2	1434 bp	39.75	6.69	29.71
sw_10_scaffold_18995 Species: RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated (50%)	2	1036 bp	43.05	4.54	93.24
sw_10_scaffold_17424 Species: Fulvivirga imtechensis (50%)	2	1103 bp	38.35	4.99	96.83
sw_10_scaffold_7139 Species: GWF2_Bacteroidetes_33_38_curated (50%)	2	1993 bp	42.05	5.12	96.19
sw_10_scaffold_10726 Species: Pedobacter glucosidilyticus (50%)	2	1532 bp	38.45	4.83	82.25
sw_10_scaffold_27553 Species: GWF2_Bacteroidetes_35_48_curated (50%)	2	1472 bp	39.74	4.89	77.85
sw_10_scaffold_32864 Species: CG_Bacteroid_01 (50%)	2	1249 bp	41.95	4.32	45.16
sw_10_scaffold_15337 Species: RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated (50%)	2	1208 bp	42.96	3.97	78.48
sw_10_scaffold_13033 Species: Niastella koreensis (50%)	2	1349 bp	39.66	4.30	100.74
sw_10_scaffold_12574 Species: Pedobacter antarcticus (50%)	2	1382 bp	39.65	5.93	79.67
sw_10_scaffold_15821 Species: Marivirga tractuosa (50%)	2	1183 bp	39.64	4.90	97.63
sw_10_scaffold_17897 Species: GWD2_Bacteroidetes_33_33_curated (50%)	2	1081 bp	38.11	6.01	98.80
sw_10_scaffold_11193 Species: Gramella forsetii (50%)	2	1488 bp	39.72	5.71	37.10
sw_10_scaffold_8071 Species: RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated (50%)	2	1845 bp	38.86	4.72	92.52
sw_10_scaffold_15595 Species: Haliscomenobacter hydrossis (50%)	2	1195 bp	40.67	5.61	100.17
sw_10_scaffold_8995 Species: Flammeovirgaceae bacterium 311 (50%)	2	1716 bp	37.94	6.00	99.13
sw_10_scaffold_11429 Species: Mucilaginibacter paludis (50%)	2	1468 bp	38.15	3.54	71.12
sw_10_scaffold_10278 Species: Dysgonomonas mossii (50%)	2	2266 bp	39.81	7.50	85.13
sw_10_scaffold_11892 Species: Gillisia limnaea (50%)	2	2503 bp	38.39	5.95	49.26
sw_10_scaffold_15831 Species: Fulvivirga imtechensis (50%)	2	1183 bp	40.57	5.92	86.48

Displaying items 201-250 of 499 in total

SW_10_Bacteroidetes_40_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_10_Bacteroidetes_40_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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