ggKbase | organisms

Consensus taxonomy: Chlorophyta → Viridiplantae

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_10_UNK

Properties

Avg. coverage: 6.08 Longest contig: 7.50 Kbp Bin length: 1.16 Mbp GC content: 54.51 %

Contigs count: 662 Features count: 1220 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 MC: 4 BSCG 9 / 51 MC: 3 ASCG 8 / 38

Displaying items 251-300 of 662 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_10_scaffold_8156 Species: Micromonas sp. RCC299 (50%)	2	4062 bp	54.26	5.61	47.12
sw_10_scaffold_5161 Species: Tetraselmis sp. GSL018 (50%)	2	2434 bp	57.15	9.33	56.20
sw_10_scaffold_6313 Species: Chlamydomonas reinhardtii (50%)	2	2151 bp	57.55	6.42	67.09
sw_10_scaffold_9540 Species: Ostreococcus tauri (50%)	2	2617 bp	55.41	5.62	83.68
sw_10_scaffold_13124 Species: Tetraselmis sp. GSL018 (50%)	2	2172 bp	54.88	5.71	100.41
sw_10_scaffold_6546 Species: Volvox carteri (50%)	2	3147 bp	51.95	5.37	85.80
sw_10_scaffold_12896 Species: Ostreococcus 'lucimarinus' (50%)	2	2487 bp	57.54	6.03	53.44
sw_10_scaffold_11283 Species: Monoraphidium neglectum (50%)	2	1480 bp	53.78	6.55	59.19
sw_10_scaffold_19348 Species: Micromonas sp. RCC299 (50%)	2	1503 bp	59.75	5.92	74.45
sw_10_scaffold_12205 Species: Coccomyxa subellipsoidea (50%)	2	1410 bp	51.42	6.24	80.21
sw_10_scaffold_24622 Species: Chlorella variabilis (50%)	2	1407 bp	56.65	6.40	60.55
sw_10_scaffold_4705 Species: Coccomyxa subellipsoidea (50%)	2	2593 bp	56.65	5.63	90.24
sw_10_scaffold_7471 Species: Micromonas pusilla (50%)	2	2540 bp	53.07	5.55	100.04
sw_10_scaffold_11978 Species: Tetraselmis sp. GSL018 (50%)	2	1426 bp	54.49	7.99	91.09
sw_10_scaffold_7702 Species: Coccomyxa subellipsoidea (50%)	2	1902 bp	54.36	5.73	56.62
sw_10_scaffold_8626 Species: Micromonas sp. RCC299 (50%)	2	1767 bp	51.90	6.40	27.84
sw_10_scaffold_9318 Species: Micromonas sp. RCC299 (50%)	2	1676 bp	53.46	5.85	93.79
sw_10_scaffold_11981 Species: Ostreococcus 'lucimarinus' (50%)	2	2518 bp	51.27	6.20	36.58
sw_10_scaffold_14054 Species: Coccomyxa subellipsoidea (50%)	2	1284 bp	54.52	6.15	69.63
sw_10_scaffold_20518 Species: Micromonas pusilla (50%)	2	1667 bp	53.81	7.08	91.78
sw_10_scaffold_16151 Species: Micromonas sp. RCC299 (50%)	2	1785 bp	55.57	6.16	62.35
sw_10_scaffold_10603 Species: Chlamydomonas reinhardtii (50%)	2	2201 bp	53.02	5.82	91.05
sw_10_scaffold_3840 Species: Micromonas pusilla (50%)	2	3572 bp	53.42	6.22	56.10
sw_10_scaffold_4947 Species: Chlamydomonas reinhardtii (50%)	2	2502 bp	54.40	7.27	48.08
sw_10_scaffold_26927 Species: Tetraselmis sp. GSL018 (50%)	2	1259 bp	59.41	6.20	97.93
sw_10_scaffold_16575 Species: Ostreococcus tauri (50%)	2	1683 bp	56.33	5.76	63.81
sw_10_scaffold_19361 Species: Coccomyxa subellipsoidea (50%)	2	1021 bp	55.14	6.76	56.12
sw_10_scaffold_7252 Species: Ostreococcus tauri (50%)	2	2746 bp	56.26	5.43	88.49
sw_10_scaffold_15468 Species: Ostreococcus tauri (50%)	2	2426 bp	56.80	5.28	81.37
sw_10_scaffold_12451 Species: Ostreococcus tauri (50%)	2	2495 bp	58.44	6.53	100.04
sw_10_scaffold_17543 Species: Micromonas sp. RCC299 (50%)	2	1837 bp	52.80	5.77	95.21
sw_10_scaffold_15218 Species: Micromonas sp. RCC299 (50%)	2	1215 bp	56.71	6.01	97.28
sw_10_scaffold_18004 Species: Micromonas sp. RCC299 (50%)	2	1077 bp	50.97	7.89	50.70
sw_10_scaffold_22609 Species: Micromonas sp. RCC299 (50%)	2	1653 bp	57.05	5.99	103.27
sw_10_scaffold_10151 Species: Chlamydomonas reinhardtii (50%)	2	1588 bp	56.86	6.30	80.10
sw_10_scaffold_15934 Species: Tetraselmis sp. GSL018 (50%)	2	1177 bp	54.46	5.86	65.51
sw_10_scaffold_16164 Species: Micromonas pusilla (50%)	2	1865 bp	61.66	7.24	88.31
sw_10_scaffold_10153 Species: Coccomyxa subellipsoidea (50%)	2	1588 bp	59.07	6.55	97.29
sw_10_scaffold_12919 Species: Ostreococcus tauri (50%)	2	2296 bp	53.09	6.01	56.71
sw_10_scaffold_22614 Species: Ostreococcus tauri (50%)	2	1459 bp	55.86	5.96	49.35
sw_10_scaffold_25822 Species: Micromonas sp. RCC299 (50%)	2	1332 bp	50.23	5.48	64.86
sw_10_scaffold_29476 Species: Ostreococcus 'lucimarinus' (50%)	2	1287 bp	53.07	4.51	54.31
sw_10_scaffold_9108 Species: Volvox carteri (50%)	2	1701 bp	53.79	5.17	47.97
sw_10_scaffold_16358 Species: Micromonas pusilla (50%)	2	1155 bp	54.37	6.49	91.43
sw_10_scaffold_15940 Species: Tetraselmis sp. GSL018 (50%)	2	1176 bp	55.70	7.65	92.60
sw_10_scaffold_22648 Species: Tetraselmis sp. GSL018 (50%)	2	2134 bp	58.39	8.01	64.95
sw_10_scaffold_6345 Species: Tetraselmis sp. GSL018 (50%)	2	2143 bp	56.88	5.83	98.97
sw_10_scaffold_6577 Species: Bathycoccus prasinos (50%)	2	2098 bp	52.19	5.77	46.04
sw_10_scaffold_7037 Species: Tetraselmis sp. GSL018 (50%)	2	3608 bp	51.61	6.51	100.19
sw_10_scaffold_10852 Species: Ostreococcus 'lucimarinus' (50%)	2	1521 bp	55.29	4.54	93.10

Displaying items 251-300 of 662 in total

SW_10_Chlorophyta_55_6

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_10_Chlorophyta_55_6

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

Processing

Terms of Service

Search Help