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SW_10_Chlorophyta_55_6

In projects: SW_10

Consensus taxonomy: Chlorophyta  →  Viridiplantae

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_10_UNK

Properties

Avg. coverage: 6.08 Longest contig: 7.50 Kbp Bin length: 1.16 Mbp GC content: 54.51 %
Contigs count: 662 Features count: 1220 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 MC: 4 BSCG 9 / 51 MC: 3 ASCG 8 / 38
Displaying items 201-250 of 662 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_10_scaffold_16516
Species: Monoraphidium neglectum (50%)
2 1960 bp 54.29 5.31 101.33
sw_10_scaffold_7656
Species: Ostreococcus tauri (50%)
2 1909 bp 58.15 6.23 68.99
sw_10_scaffold_11700
Species: Micromonas sp. RCC299 (50%)
2 1448 bp 53.38 5.39 96.34
sw_10_scaffold_8580
Species: Volvox carteri (50%)
2 1774 bp 52.37 4.85 64.09
sw_10_scaffold_15642
Species: Ostreococcus tauri (50%)
2 1192 bp 58.47 5.12 89.35
sw_10_scaffold_13087
Species: Chlamydomonas reinhardtii (50%)
2 1345 bp 55.99 7.21 87.66
sw_10_scaffold_9965
Species: Monoraphidium neglectum (50%)
2 1606 bp 50.68 6.23 83.31
sw_10_scaffold_11705
Species: Bathycoccus prasinos (50%)
2 2226 bp 55.88 6.24 92.32
sw_10_scaffold_6279
Species: Ostreococcus 'lucimarinus' (50%)
2 2591 bp 56.54 6.06 89.97
sw_10_scaffold_16754
Species: Ostreococcus tauri (50%)
2 1134 bp 54.94 6.00 73.81
sw_10_scaffold_19540
Species: Tetraselmis sp. GSL018 (50%)
2 1013 bp 51.14 6.02 92.10
sw_10_scaffold_27832
Species: Ostreococcus tauri (50%)
2 1325 bp 52.45 4.53 78.57
sw_10_scaffold_34718
Species: Bathycoccus prasinos (50%)
2 1230 bp 58.54 6.75 83.41
sw_10_scaffold_9506
Species: Volvox carteri (50%)
2 1655 bp 53.78 7.07 98.07
sw_10_scaffold_16987
Species: Volvox carteri (50%)
2 1123 bp 54.94 6.32 80.41
sw_10_scaffold_19081
Species: Tetraselmis sp. GSL018 (50%)
2 1033 bp 61.28 5.71 58.37
sw_10_scaffold_11709
Species: Micromonas sp. RCC299 (50%)
2 1447 bp 54.53 4.91 92.47
sw_10_scaffold_15165
Species: Coccomyxa subellipsoidea (50%)
2 1219 bp 57.01 5.09 64.97
sw_10_scaffold_9970
Species: Chlamydomonas reinhardtii (50%)
2 1605 bp 55.76 5.30 57.94
sw_10_scaffold_18837
Species: Micromonas sp. RCC299 (50%)
2 1042 bp 53.36 7.77 50.67
sw_10_scaffold_9746
Species: Tetraselmis sp. GSL018 (50%)
2 1631 bp 54.51 5.03 99.88
sw_10_scaffold_11948
Species: Coccomyxa subellipsoidea (50%)
2 1428 bp 58.47 5.39 103.99
sw_10_scaffold_16534
Species: Coccomyxa subellipsoidea (50%)
2 1144 bp 50.87 5.33 91.52
sw_10_scaffold_38074
Species: Tetraselmis sp. GSL018 (50%)
2 1127 bp 53.95 7.90 52.71
sw_10_scaffold_26722
Species: Tetraselmis sp. GSL018 (100%)
2 1548 bp 56.59 6.20 93.41
sw_10_scaffold_15427
Species: Ostreococcus 'lucimarinus' (50%)
2 1203 bp 56.69 5.99 82.79
sw_10_scaffold_19093
Species: Chlamydomonas reinhardtii (50%)
2 1032 bp 54.84 4.75 86.34
sw_10_scaffold_10109
Species: Volvox carteri (50%)
2 1591 bp 56.07 6.66 94.47
sw_10_scaffold_13797
Species: Tetraselmis sp. GSL018 (50%)
2 1299 bp 53.89 6.62 95.84
sw_10_scaffold_19096
Species: Bathycoccus prasinos (50%)
2 1792 bp 55.69 6.14 53.74
sw_10_scaffold_25622
Species: Tetraselmis sp. GSL018 (50%)
2 1249 bp 54.68 7.45 81.18
sw_10_scaffold_10342
Species: Tetraselmis sp. GSL018 (50%)
2 1569 bp 60.42 5.80 95.60
sw_10_scaffold_13570
Species: Chlamydomonas reinhardtii (50%)
2 1314 bp 58.90 6.32 65.98
sw_10_scaffold_14953
Species: Micromonas sp. RCC299 (50%)
2 1230 bp 59.67 6.26 100.49
sw_10_scaffold_5841
Species: Chlamydomonas reinhardtii (50%)
2 2257 bp 50.51 6.51 79.22
sw_10_scaffold_11961
Species: Ostreococcus tauri (50%)
2 1427 bp 53.33 5.96 92.50
sw_10_scaffold_9760
Species: Tetraselmis sp. GSL018 (50%)
2 1629 bp 57.03 5.83 96.50
sw_10_scaffold_12422
Species: Chlamydomonas reinhardtii (50%)
2 1392 bp 56.61 5.75 98.71
sw_10_scaffold_19567
Species: Micromonas pusilla (50%)
2 1012 bp 50.89 4.64 86.26
sw_10_scaffold_6305
Species: Tetraselmis sp. GSL018 (50%)
2 2917 bp 54.30 7.16 58.93
sw_10_scaffold_17286
Species: Chlorella variabilis (50%)
2 2074 bp 56.41 5.64 94.60
sw_10_scaffold_22490
Species: Auxenochlorella protothecoides (50%)
2 1676 bp 52.80 5.55 69.99
sw_10_scaffold_5386
Species: Micromonas pusilla (50%)
2 2370 bp 52.78 6.16 90.63
sw_10_scaffold_17980
Species: Micromonas pusilla (50%)
2 1078 bp 52.88 6.86 88.50
sw_10_scaffold_24577
Species: Ostreococcus 'lucimarinus' (50%)
2 1356 bp 55.31 6.49 97.35
sw_10_scaffold_9998
Species: Ostreococcus tauri (50%)
2 1602 bp 57.99 7.43 84.64
sw_10_scaffold_11277
Species: Chlamydomonas reinhardtii (50%)
2 1481 bp 53.07 4.79 38.49
sw_10_scaffold_8615
Species: Bathycoccus prasinos (50%)
2 1768 bp 52.26 6.73 83.65
sw_10_scaffold_16325
Species: Ostreococcus tauri (50%)
2 1156 bp 51.99 6.31 67.47
sw_10_scaffold_8386
Species: Tetraselmis sp. GSL018 (50%)
2 2558 bp 54.53 5.63 76.23
Displaying items 201-250 of 662 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.