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SW_10_Chlorophyta_55_6

In projects: SW_10

Consensus taxonomy: Chlorophyta  →  Viridiplantae

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_10_UNK

Properties

Avg. coverage: 6.08 Longest contig: 7.50 Kbp Bin length: 1.16 Mbp GC content: 54.51 %
Contigs count: 662 Features count: 1220 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 MC: 4 BSCG 9 / 51 MC: 3 ASCG 8 / 38
Displaying items 151-200 of 662 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_10_scaffold_12817
Species: Bathycoccus prasinos (50%)
2 2470 bp 54.98 5.59 59.76
sw_10_scaffold_26461
Species: Chlorella variabilis (50%)
2 1914 bp 54.91 7.16 46.87
sw_10_scaffold_9002
Species: Volvox carteri (50%)
2 1715 bp 52.01 6.65 89.39
sw_10_scaffold_11668
Species: Micromonas sp. RCC299 (50%)
2 2034 bp 55.85 6.64 77.73
sw_10_scaffold_15606
Species: Tetraselmis sp. GSL018 (50%)
2 1194 bp 52.35 6.70 61.81
sw_10_scaffold_31536
Species: Chlamydomonas reinhardtii (50%)
2 1335 bp 56.85 6.82 61.12
sw_10_scaffold_19502
Species: Tetraselmis sp. GSL018 (50%)
2 1015 bp 54.09 4.93 83.65
sw_10_scaffold_19274
Species: Micromonas pusilla (50%)
2 1591 bp 56.76 6.54 95.98
sw_10_scaffold_4631
Species: Micromonas sp. RCC299 (100%)
2 2622 bp 55.07 5.03 98.63
sw_10_scaffold_13746
Species: Volvox carteri (50%)
2 2250 bp 52.53 5.38 66.53
sw_10_scaffold_19045
Species: Coccomyxa subellipsoidea (50%)
2 1919 bp 56.02 5.63 96.93
sw_10_scaffold_11673
Species: Chlorella variabilis (50%)
2 1450 bp 55.45 6.41 99.31
sw_10_scaffold_8550
Species: Tetraselmis sp. GSL018 (50%)
2 1777 bp 57.12 5.85 87.62
sw_10_scaffold_13979
Species: Tetraselmis sp. GSL018 (50%)
2 1810 bp 50.11 7.13 99.45
sw_10_scaffold_4180
Species: Micromonas sp. RCC299 (50%)
2 2774 bp 54.15 6.13 85.44
sw_10_scaffold_10522
Species: Ostreococcus tauri (50%)
2 1552 bp 58.25 6.06 98.58
sw_10_scaffold_10753
Species: Tetraselmis sp. GSL018 (50%)
2 1529 bp 56.70 6.61 78.88
sw_10_scaffold_14672
Species: Micromonas sp. RCC299 (50%)
2 1246 bp 57.46 6.26 78.97
sw_10_scaffold_17185
Species: Micromonas pusilla (50%)
2 1114 bp 56.82 6.55 71.90
sw_10_scaffold_4868
Species: Monoraphidium neglectum (50%)
2 2530 bp 53.60 4.78 47.43
sw_10_scaffold_8096
Species: Ostreococcus 'lucimarinus' (50%)
2 2901 bp 53.98 6.24 99.59
sw_10_scaffold_13985
Species: Chlorella variabilis (50%)
2 2806 bp 53.06 5.99 85.64
sw_10_scaffold_15136
Species: Monoraphidium neglectum (50%)
2 1220 bp 52.95 4.75 95.16
sw_10_scaffold_18571
Species: Monoraphidium neglectum (50%)
2 1053 bp 52.23 6.93 68.66
sw_10_scaffold_19284
Species: Coccomyxa subellipsoidea (50%)
2 1024 bp 62.21 5.47 98.73
sw_10_scaffold_26549
Species: Ostreococcus tauri (50%)
2 2833 bp 47.30 6.64 33.99
sw_10_scaffold_14216
Species: Micromonas sp. RCC299 (50%)
2 1274 bp 59.81 7.06 85.01
sw_10_scaffold_4643
Species: Chlorella variabilis (50%)
2 2616 bp 50.54 7.03 69.95
sw_10_scaffold_13297
Species: Auxenochlorella protothecoides (50%)
2 1933 bp 54.11 7.60 76.51
sw_10_scaffold_27732
Species: Tetraselmis sp. GSL018 (50%)
2 1370 bp 53.58 7.45 99.20
sw_10_scaffold_15854
Species: Micromonas pusilla (50%)
2 1182 bp 53.89 5.92 81.73
sw_10_scaffold_6719
Species: Bathycoccus prasinos (50%)
2 2072 bp 55.79 5.36 92.37
sw_10_scaffold_4416
Species: Micromonas pusilla (50%)
2 4361 bp 54.76 5.55 49.87
sw_10_scaffold_11457
Species: Monoraphidium neglectum (50%)
2 1466 bp 56.41 7.23 80.22
sw_10_scaffold_11688
Species: Micromonas sp. RCC299 (50%)
2 1449 bp 57.63 6.49 77.23
sw_10_scaffold_15143
Species: Ostreococcus 'lucimarinus' (50%)
2 1771 bp 57.14 6.04 55.73
sw_10_scaffold_9025
Species: Tetraselmis sp. GSL018 (50%)
2 2468 bp 55.02 5.92 90.19
sw_10_scaffold_24352
Species: Micromonas sp. RCC299 (50%)
2 1630 bp 55.89 6.38 51.17
sw_10_scaffold_13071
Species: Coccomyxa subellipsoidea (50%)
2 1346 bp 58.47 5.72 81.35
sw_10_scaffold_17471
Species: Ostreococcus 'lucimarinus' (50%)
2 1101 bp 64.31 6.27 103.27
sw_10_scaffold_23276
Species: Micromonas pusilla (50%)
2 1586 bp 56.43 5.55 86.63
sw_10_scaffold_14455
Species: Micromonas sp. RCC299 (50%)
2 2062 bp 56.94 5.38 72.45
sw_10_scaffold_27755
Species: Micromonas sp. RCC299 (50%)
2 1515 bp 51.62 5.15 85.74
sw_10_scaffold_10308
Species: Ostreococcus tauri (50%)
2 1572 bp 56.55 5.66 95.04
sw_10_scaffold_13535
Species: Coccomyxa subellipsoidea (50%)
2 2332 bp 57.03 5.87 87.35
sw_10_scaffold_5574
Species: Micromonas pusilla (50%)
2 2318 bp 52.11 6.13 53.84
sw_10_scaffold_18585
Species: Tetraselmis sp. GSL018 (50%)
2 1052 bp 53.80 5.61 96.10
sw_10_scaffold_9725
Species: Bathycoccus prasinos (50%)
2 2265 bp 52.67 6.53 95.36
sw_10_scaffold_18357
Species: Ostreococcus 'lucimarinus' (50%)
2 1062 bp 54.05 6.21 85.31
sw_10_scaffold_34651
Species: Bathycoccus prasinos (50%)
2 1180 bp 56.19 6.44 60.51
Displaying items 151-200 of 662 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.