ggKbase | organisms

SW_10_Chlorophyta_55_6

In projects: SW_10

Consensus taxonomy: Chlorophyta → Viridiplantae

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_10_UNK

Properties

Avg. coverage: 6.08 Longest contig: 7.50 Kbp Bin length: 1.16 Mbp GC content: 54.51 %

Contigs count: 662 Features count: 1220 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 MC: 4 BSCG 9 / 51 MC: 3 ASCG 8 / 38

Displaying items 151-200 of 662 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_10_scaffold_12817 Species: Bathycoccus prasinos (50%)	2	2470 bp	54.98	5.59	59.76
sw_10_scaffold_26461 Species: Chlorella variabilis (50%)	2	1914 bp	54.91	7.16	46.87
sw_10_scaffold_9002 Species: Volvox carteri (50%)	2	1715 bp	52.01	6.65	89.39
sw_10_scaffold_11668 Species: Micromonas sp. RCC299 (50%)	2	2034 bp	55.85	6.64	77.73
sw_10_scaffold_15606 Species: Tetraselmis sp. GSL018 (50%)	2	1194 bp	52.35	6.70	61.81
sw_10_scaffold_31536 Species: Chlamydomonas reinhardtii (50%)	2	1335 bp	56.85	6.82	61.12
sw_10_scaffold_19502 Species: Tetraselmis sp. GSL018 (50%)	2	1015 bp	54.09	4.93	83.65
sw_10_scaffold_19274 Species: Micromonas pusilla (50%)	2	1591 bp	56.76	6.54	95.98
sw_10_scaffold_4631 Species: Micromonas sp. RCC299 (100%)	2	2622 bp	55.07	5.03	98.63
sw_10_scaffold_13746 Species: Volvox carteri (50%)	2	2250 bp	52.53	5.38	66.53
sw_10_scaffold_19045 Species: Coccomyxa subellipsoidea (50%)	2	1919 bp	56.02	5.63	96.93
sw_10_scaffold_11673 Species: Chlorella variabilis (50%)	2	1450 bp	55.45	6.41	99.31
sw_10_scaffold_8550 Species: Tetraselmis sp. GSL018 (50%)	2	1777 bp	57.12	5.85	87.62
sw_10_scaffold_13979 Species: Tetraselmis sp. GSL018 (50%)	2	1810 bp	50.11	7.13	99.45
sw_10_scaffold_4180 Species: Micromonas sp. RCC299 (50%)	2	2774 bp	54.15	6.13	85.44
sw_10_scaffold_10522 Species: Ostreococcus tauri (50%)	2	1552 bp	58.25	6.06	98.58
sw_10_scaffold_10753 Species: Tetraselmis sp. GSL018 (50%)	2	1529 bp	56.70	6.61	78.88
sw_10_scaffold_14672 Species: Micromonas sp. RCC299 (50%)	2	1246 bp	57.46	6.26	78.97
sw_10_scaffold_17185 Species: Micromonas pusilla (50%)	2	1114 bp	56.82	6.55	71.90
sw_10_scaffold_4868 Species: Monoraphidium neglectum (50%)	2	2530 bp	53.60	4.78	47.43
sw_10_scaffold_8096 Species: Ostreococcus 'lucimarinus' (50%)	2	2901 bp	53.98	6.24	99.59
sw_10_scaffold_13985 Species: Chlorella variabilis (50%)	2	2806 bp	53.06	5.99	85.64
sw_10_scaffold_15136 Species: Monoraphidium neglectum (50%)	2	1220 bp	52.95	4.75	95.16
sw_10_scaffold_18571 Species: Monoraphidium neglectum (50%)	2	1053 bp	52.23	6.93	68.66
sw_10_scaffold_19284 Species: Coccomyxa subellipsoidea (50%)	2	1024 bp	62.21	5.47	98.73
sw_10_scaffold_26549 Species: Ostreococcus tauri (50%)	2	2833 bp	47.30	6.64	33.99
sw_10_scaffold_14216 Species: Micromonas sp. RCC299 (50%)	2	1274 bp	59.81	7.06	85.01
sw_10_scaffold_4643 Species: Chlorella variabilis (50%)	2	2616 bp	50.54	7.03	69.95
sw_10_scaffold_13297 Species: Auxenochlorella protothecoides (50%)	2	1933 bp	54.11	7.60	76.51
sw_10_scaffold_27732 Species: Tetraselmis sp. GSL018 (50%)	2	1370 bp	53.58	7.45	99.20
sw_10_scaffold_15854 Species: Micromonas pusilla (50%)	2	1182 bp	53.89	5.92	81.73
sw_10_scaffold_6719 Species: Bathycoccus prasinos (50%)	2	2072 bp	55.79	5.36	92.37
sw_10_scaffold_4416 Species: Micromonas pusilla (50%)	2	4361 bp	54.76	5.55	49.87
sw_10_scaffold_11457 Species: Monoraphidium neglectum (50%)	2	1466 bp	56.41	7.23	80.22
sw_10_scaffold_11688 Species: Micromonas sp. RCC299 (50%)	2	1449 bp	57.63	6.49	77.23
sw_10_scaffold_15143 Species: Ostreococcus 'lucimarinus' (50%)	2	1771 bp	57.14	6.04	55.73
sw_10_scaffold_9025 Species: Tetraselmis sp. GSL018 (50%)	2	2468 bp	55.02	5.92	90.19
sw_10_scaffold_24352 Species: Micromonas sp. RCC299 (50%)	2	1630 bp	55.89	6.38	51.17
sw_10_scaffold_13071 Species: Coccomyxa subellipsoidea (50%)	2	1346 bp	58.47	5.72	81.35
sw_10_scaffold_17471 Species: Ostreococcus 'lucimarinus' (50%)	2	1101 bp	64.31	6.27	103.27
sw_10_scaffold_23276 Species: Micromonas pusilla (50%)	2	1586 bp	56.43	5.55	86.63
sw_10_scaffold_14455 Species: Micromonas sp. RCC299 (50%)	2	2062 bp	56.94	5.38	72.45
sw_10_scaffold_27755 Species: Micromonas sp. RCC299 (50%)	2	1515 bp	51.62	5.15	85.74
sw_10_scaffold_10308 Species: Ostreococcus tauri (50%)	2	1572 bp	56.55	5.66	95.04
sw_10_scaffold_13535 Species: Coccomyxa subellipsoidea (50%)	2	2332 bp	57.03	5.87	87.35
sw_10_scaffold_5574 Species: Micromonas pusilla (50%)	2	2318 bp	52.11	6.13	53.84
sw_10_scaffold_18585 Species: Tetraselmis sp. GSL018 (50%)	2	1052 bp	53.80	5.61	96.10
sw_10_scaffold_9725 Species: Bathycoccus prasinos (50%)	2	2265 bp	52.67	6.53	95.36
sw_10_scaffold_18357 Species: Ostreococcus 'lucimarinus' (50%)	2	1062 bp	54.05	6.21	85.31
sw_10_scaffold_34651 Species: Bathycoccus prasinos (50%)	2	1180 bp	56.19	6.44	60.51

Displaying items 151-200 of 662 in total

SW_10_Chlorophyta_55_6

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_10_Chlorophyta_55_6

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

Processing

Terms of Service

Search Help