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SW_10_Chlorophyta_55_6

In projects: SW_10

Consensus taxonomy: Chlorophyta  →  Viridiplantae

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_10_UNK

Properties

Avg. coverage: 6.08 Longest contig: 7.50 Kbp Bin length: 1.16 Mbp GC content: 54.51 %
Contigs count: 662 Features count: 1220 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 MC: 4 BSCG 9 / 51 MC: 3 ASCG 8 / 38
Displaying items 101-150 of 662 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
sw_10_scaffold_8953
Species: Ostreococcus tauri (50%)
2 2705 bp 56.08 6.77 71.53
sw_10_scaffold_14150
Species: Micromonas pusilla (50%)
2 1279 bp 56.29 6.02 79.28
sw_10_scaffold_15555
Species: Micromonas pusilla (50%)
2 2161 bp 52.29 5.51 56.36
sw_10_scaffold_16018
Species: Bathycoccus prasinos (50%)
2 1173 bp 53.88 5.29 46.04
sw_10_scaffold_28616
Species: Micromonas sp. RCC299 (50%)
2 1468 bp 51.02 5.59 96.87
sw_10_scaffold_6653
Species: Helicosporidium sp. ATCC 50920 (50%)
2 2086 bp 58.39 6.38 79.24
sw_10_scaffold_6423
Species: Ostreococcus 'lucimarinus' (50%)
2 2128 bp 53.15 5.45 49.91
sw_10_scaffold_11390
Species: Auxenochlorella protothecoides (50%)
2 2547 bp 52.14 5.65 79.15
sw_10_scaffold_13465
Species: Ostreococcus tauri (50%)
2 2417 bp 53.66 6.41 50.77
sw_10_scaffold_14851
Species: Micromonas pusilla (100%)
2 1236 bp 55.99 6.63 83.25
sw_10_scaffold_17638
Species: Micromonas sp. RCC299 (50%)
2 1094 bp 52.01 6.76 81.17
sw_10_scaffold_7350
Species: Bathycoccus prasinos (50%)
2 1957 bp 54.22 5.88 87.99
sw_10_scaffold_15313
Species: Bathycoccus prasinos (50%)
2 1210 bp 51.32 4.46 96.45
sw_10_scaffold_24074
Species: Coccomyxa subellipsoidea (50%)
2 1467 bp 60.19 5.86 92.23
sw_10_scaffold_2629
Species: Tetraselmis sp. GSL018 (50%)
2 3640 bp 54.56 6.81 94.20
sw_10_scaffold_5973
Species: Bathycoccus prasinos (50%)
2 2230 bp 53.72 8.39 99.82
sw_10_scaffold_9199
Species: Bathycoccus prasinos (50%)
2 1689 bp 50.80 6.04 97.16
sw_10_scaffold_20057
Species: Ostreococcus 'lucimarinus' (50%)
2 2558 bp 55.24 6.10 88.78
sw_10_scaffold_11173
Species: Tetraselmis sp. GSL018 (50%)
2 2323 bp 54.89 6.20 98.15
sw_10_scaffold_17416
Species: Tetraselmis sp. GSL018 (50%)
2 1103 bp 56.75 5.71 94.92
sw_10_scaffold_19007
Species: Auxenochlorella protothecoides (50%)
2 1035 bp 49.66 7.05 43.19
sw_10_scaffold_6669
Species: Bathycoccus prasinos (50%)
2 2082 bp 58.65 6.39 90.63
sw_10_scaffold_9433
Species: Ostreococcus tauri (50%)
2 1664 bp 55.17 5.29 82.93
sw_10_scaffold_8743
Species: Ostreococcus tauri (50%)
2 2282 bp 51.10 5.57 57.84
sw_10_scaffold_34261
Species: Chlorella variabilis (50%)
2 1380 bp 56.52 7.10 47.17
sw_10_scaffold_3933
Species: Micromonas pusilla (50%)
2 2889 bp 51.19 7.17 68.12
sw_10_scaffold_8744
Species: Micromonas pusilla (50%)
2 2563 bp 53.65 7.25 75.03
sw_10_scaffold_10255
Species: Ostreococcus tauri (50%)
2 1578 bp 52.66 5.77 55.70
sw_10_scaffold_6902
Species: Micromonas sp. RCC299 (50%)
2 2036 bp 55.16 5.94 62.77
sw_10_scaffold_10948
Species: Micromonas sp. RCC299 (50%)
2 2143 bp 56.18 5.69 82.03
sw_10_scaffold_8516
Species: Coccomyxa subellipsoidea (50%)
2 1783 bp 54.96 6.45 71.17
sw_10_scaffold_26342
Species: Micromonas pusilla (50%)
2 1368 bp 62.35 5.12 96.27
sw_10_scaffold_8748
Species: Micromonas sp. RCC299 (50%)
2 1749 bp 54.32 7.55 91.42
sw_10_scaffold_11413
Species: Coccomyxa subellipsoidea (50%)
2 1469 bp 52.35 5.51 63.92
sw_10_scaffold_8521
Species: Micromonas sp. RCC299 (50%)
2 1782 bp 61.62 6.12 93.27
sw_10_scaffold_30016
Species: Micromonas pusilla (50%)
2 1414 bp 56.15 5.80 67.04
sw_10_scaffold_10956
Species: Monoraphidium neglectum (50%)
2 1510 bp 53.44 5.63 77.88
sw_10_scaffold_12570
Species: Micromonas pusilla (50%)
2 1383 bp 59.15 6.29 80.48
sw_10_scaffold_3435
Species: Micromonas sp. RCC299 (50%)
2 3131 bp 51.45 5.59 72.15
sw_10_scaffold_17159
Species: Chlorella variabilis (50%)
2 1823 bp 52.55 7.57 83.43
sw_10_scaffold_5994
Species: Auxenochlorella protothecoides (50%)
2 2224 bp 54.86 6.38 49.24
sw_10_scaffold_30040
Species: Volvox carteri (50%)
2 1282 bp 53.12 5.93 102.73
sw_10_scaffold_13266
Species: Micromonas sp. RCC299 (100%)
2 1988 bp 57.39 5.53 90.24
sw_10_scaffold_11656
Species: Ostreococcus tauri (50%)
2 1451 bp 56.86 6.69 75.26
sw_10_scaffold_10276
Species: Micromonas pusilla (50%)
2 1575 bp 56.25 5.78 67.62
sw_10_scaffold_17168
Species: Micromonas pusilla (50%)
2 1115 bp 53.72 5.65 84.75
sw_10_scaffold_4390
Species: Volvox carteri (50%)
2 2695 bp 55.29 5.19 78.48
sw_10_scaffold_12585
Species: Coccomyxa subellipsoidea (50%)
2 1381 bp 58.58 5.07 81.25
sw_10_scaffold_7850
Species: Ostreococcus 'lucimarinus' (50%)
2 1879 bp 55.72 5.75 77.75
sw_10_scaffold_9001
Species: Chlorella variabilis (100%)
2 2261 bp 52.90 9.20 36.49
Displaying items 101-150 of 662 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.