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sw_11_scaffold_2422

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_11_scaffold_2422_1
Callithrix jacchus, Callithrix, Primates, Mammalia, Chordata, Metazoa

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1..708
DNA (708bp) protein (236aa)
PREDICTED: retinitis pigmentosa 1-like 1 protein n=1 Tax=Callithrix jacchus RepID=UPI0001D38168
Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007598}; TaxID=9483 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates;
hypothetical protein
sw_11_scaffold_2422_2
unknown

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729..1274
DNA (546bp) protein (182aa)

This feature has no annotations

sw_11_scaffold_2422_3
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1258..1581)
DNA (324bp) protein (108aa)
FAD linked oxidase n=1 Tax=gamma proteobacterium HdN1 RepID=E1VL81_9GAMM
FAD-linked oxidase {ECO:0000313|EMBL:KFA92957.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystoba
FAD linked oxidase
sw_11_scaffold_2422_4
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(1590..2786)
DNA (1197bp) protein (399aa)
FAD linked oxidase; K00803 alkyldihydroxyacetonephosphate synthase [EC:2.5.1.26] id=24648151 bin=uncultivated_archaeon_J07ABHX6 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultivated_archaeon_J07ABHX6
FAD/FMN-containing dehydrogenase {ECO:0000313|EMBL:ERH09279.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
hypothetical protein
sw_11_scaffold_2422_5
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(2931..3881)
DNA (951bp) protein (317aa)
Probable metallo-beta-lactamase family hydrolase n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J8N7_HALJB
putative metallo-beta-lactamase family hydrolase
Probable metallo-beta-lactamase family hydrolase {ECO:0000313|EMBL:ADJ14222.1}; Putative metallo-beta-lactamase family hydrolase {ECO:0000313|EMBL:ELY34597.1}; TaxID=795797 species="Archaea; Euryarcha
sw_11_scaffold_2422_6
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(3856..4659)
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Halogranum salarium B-1 RepID=J3JDC5_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EJN57366.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
fbaB; fructose-1,6-bisphosphate aldolase of the DhnA family
sw_11_scaffold_2422_7
Haloferax elongans, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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4745..5872
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Haloferax elongans ATCC BAA-1513 RepID=M0H8R2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ80931.1}; TaxID=1230453 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax elongans ATCC BAA-1513
hypothetical protein
sw_11_scaffold_2422_8
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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5974..7389
DNA (1416bp) protein (472aa)
serS; seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000
Serine--tRNA ligase n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3ISF0_NATPD
sw_11_scaffold_2422_9
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(7251..7604)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Halomicrobium katesii RepID=UPI00035C7E7B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV46878.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrobium mukohataei
sw_11_scaffold_2422_10
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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7708..8229
DNA (522bp) protein (174aa)
Probable ribosome biogenesis protein C451_10200 n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N7G7_9EURY
Probable ribosome biogenesis protein C451_10200 {ECO:0000256|HAMAP-Rule:MF_01116}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source=
hypothetical protein
sw_11_scaffold_2422_11
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(8374..9423)
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LQ81_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA35727.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 100
hypothetical protein
sw_11_scaffold_2422_12
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9510..9659
DNA (150bp) protein (50aa)
50S ribosomal protein L40e n=1 Tax=halophilic archaeon J07HX64 RepID=U1QRR4_9EURY
50S ribosomal protein L40e {ECO:0000256|HAMAP-Rule:MF_00788}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
rpl40e; 50S ribosomal protein L40e
sw_11_scaffold_2422_13
Natrinema pallidum, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(9684..10214)
DNA (531bp) protein (177aa)
Beta-lactamase domain-containing protein n=1 Tax=Natrinema pallidum DSM 3751 RepID=L9YT10_9EURY
Zn-dependent hydrolase, glyoxylase
Beta-lactamase domain-containing protein {ECO:0000313|EMBL:ELY76826.1}; TaxID=1227495 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema pallidu
sw_11_scaffold_2422_14
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10304..10525
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7P352_HALMD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV47524.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrobium mukohataei
sw_11_scaffold_2422_15
Haloarcula hispanica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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10687..12387
DNA (1701bp) protein (567aa)
Histidine kinase n=2 Tax=Haloarcula hispanica RepID=V5TIL7_HALHI
histidine kinase
Histidine kinase {ECO:0000313|EMBL:AHB65136.1}; TaxID=1417673 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula hispanica N601.;"
sw_11_scaffold_2422_16
Halorhabdus utahensis, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(12424..12990)
DNA (567bp) protein (189aa)
Isopentenyl-diphosphate Delta-isomerase (EC:5.3.3.2)
Isopentenyl-diphosphate Delta-isomerase {ECO:0000313|EMBL:ACV10606.1}; EC=5.3.3.2 {ECO:0000313|EMBL:ACV10606.1};; TaxID=519442 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacte
Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Halorhabdus utahensis RepID=C7NRZ9_HALUD
sw_11_scaffold_2422_17
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(13058..13339)
DNA (282bp) protein (94aa)
Transcriptional regulator, AsnC family n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7P3J7_HALMD
AsnC family transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ACV47669.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrob
Displaying 17 items

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