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sw_11_scaffold_28

Search features with annotation key words

Displaying items 1-30 of 34 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_11_scaffold_28_1
unknown

Not on your lists

1..237
DNA (237bp) protein (79aa)

This feature has no annotations

sw_11_scaffold_28_2
unknown

Not on your lists

529..723
DNA (195bp) protein (65aa)

This feature has no annotations

sw_11_scaffold_28_3
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

1721..2152
DNA (432bp) protein (144aa)
hypothetical protein
hypothetical protein id=24658813 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:CBH26001.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_11_scaffold_28_trna_1
unknown

Not on your lists

2355..2441
DNA (87bp)
transferRNA
sw_11_scaffold_28_4
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

2532..3803
DNA (1272bp) protein (424aa)
Regulatory protein LytS {ECO:0000313|EMBL:CBH25994.1}; EC=2.7.3.- {ECO:0000313|EMBL:CBH25994.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae
Regulatory protein LytS n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HD89_SALRM
lytS; Regulatory protein LytS
sw_11_scaffold_28_5
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

3929..4702
DNA (774bp) protein (258aa)
Two-component system response regulator protein n=2 Tax=Salinibacter ruber RepID=Q2RYN6_SALRD
lytT; sensory transduction protein lytT
Sensory transduction protein lytT {ECO:0000313|EMBL:CBH25993.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinib
sw_11_scaffold_28_6
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

4768..5133
DNA (366bp) protein (122aa)
hypothetical protein
hypothetical protein id=24658804 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:ABC45149.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_11_scaffold_28_7
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

5305..5745
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HD86_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH25991.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_11_scaffold_28_8
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

6099..7331
DNA (1233bp) protein (411aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HD85_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH25990.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_11_scaffold_28_9
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

7401..8645
DNA (1245bp) protein (415aa)
ybjZ; ABC transporter ATP-binding protein
ybjZ; ABC transporter ATP-binding protein; K02004 putative ABC transport system permease protein id=24658801 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CBH25989.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Sali
sw_11_scaffold_28_10
unknown

Not on your lists

8699..8989
DNA (291bp) protein (97aa)

This feature has no annotations

sw_11_scaffold_28_11
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

9124..10344
DNA (1221bp) protein (407aa)
salY; ABC transporter permease
salY; ABC transporter permease; K02004 putative ABC transport system permease protein id=24658800 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
ABC transporter permease protein {ECO:0000313|EMBL:CBH25988.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Saliniba
sw_11_scaffold_28_12
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

10401..11918
DNA (1518bp) protein (506aa)
Outer membrane efflux protein n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2RYP1_SALRD
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:ABC44485.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacte
sw_11_scaffold_28_13
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

12000..13331
DNA (1332bp) protein (444aa)
membrane fusion efflux protein
membrane fusion efflux protein; K02005 HlyD family secretion protein id=24658798 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Membrane fusion efflux protein, putative {ECO:0000313|EMBL:ABC44985.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="
sw_11_scaffold_28_14
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

13480..14244
DNA (765bp) protein (255aa)
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein id=24658797 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CBH25985.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salin
sw_11_scaffold_28_15
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

14379..16814
DNA (2436bp) protein (812aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HD79_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH25984.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_11_scaffold_28_16
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16961..17977)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Haloarcula japonica DSM 6131 RepID=M0L868_HALJP
Uncharacterized protein {ECO:0000313|EMBL:EMA29278.1}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula japonica DSM 613
hypothetical protein
sw_11_scaffold_28_17
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(18514..20700)
DNA (2187bp) protein (729aa)
Uncharacterized protein n=1 Tax=Halogranum salarium B-1 RepID=J2ZJX5_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EJN61020.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
4Fe-4S binding protein
sw_11_scaffold_28_18
Natronorubrum bangense, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20776..21288)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Natronorubrum bangense JCM 10635 RepID=L9W0Y7_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELY43120.1}; TaxID=1227500 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natronorubrum bangense JCM 106
hypothetical protein
sw_11_scaffold_28_19
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(21414..22436)
DNA (1023bp) protein (341aa)
Trehalose utilization n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DPB7_SINAD
Trehalose utilization
Trehalose utilization {ECO:0000313|EMBL:AGA31102.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidi
sw_11_scaffold_28_20
Cecembia lonarensis, Cecembia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(22522..25704)
DNA (3183bp) protein (1061aa)
dehydrogenase n=1 Tax=Segetibacter koreensis RepID=UPI00036C39D2
Cytochrome c552 {ECO:0000313|EMBL:EKB49464.1}; TaxID=1225176 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cecembia.;" source="Cecembia lonarensis LW9.;"
membrane-bound dehydrogenase domain-containing protein
sw_11_scaffold_28_21
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(25799..27991)
DNA (2193bp) protein (731aa)
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SGU3_RHOMR
rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase {ECO:0000313|EMBL:AEN74090.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermu
sw_11_scaffold_28_22
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(28058..29509)
DNA (1452bp) protein (484aa)
Carbohydrate kinase FGGY n=2 Tax=Rhodothermus marinus RepID=D0MFR4_RHOM4
carbohydrate kinase FGGY
Carbohydrate kinase FGGY {ECO:0000313|EMBL:ACY47591.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus mar
sw_11_scaffold_28_23
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(29558..30835)
DNA (1278bp) protein (426aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MFR3_RHOM4
xylose isomerase domain-containing protein rbh
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:ACY47590.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source
sw_11_scaffold_28_24
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(30894..31079)
DNA (186bp) protein (62aa)
Uncharacterized protein n=2 Tax=Rhodothermus marinus RepID=D0MFR2_RHOM4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY47589.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source
sw_11_scaffold_28_25
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(31133..32551)
DNA (1419bp) protein (473aa)
Transmembrane prediction n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SI38_RHOMR
transmembrane prediction
Transmembrane prediction {ECO:0000313|EMBL:AEN74094.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus mar
sw_11_scaffold_28_26
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(32602..35604)
DNA (3003bp) protein (1001aa)
Alpha-L-rhamnosidase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MFR0_RHOM4
alpha-L-rhamnosidase
Alpha-L-rhamnosidase {ECO:0000313|EMBL:ACY47587.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus
sw_11_scaffold_28_27
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

36133..37101
DNA (969bp) protein (323aa)
Transcriptional regulator, DeoR family n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MFQ7_RHOM4
DeoR family transcriptional regulator rbh
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:ACY47584.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rh
sw_11_scaffold_28_28
Chroococcales cyanobacterium CENA595, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

37516..38721
DNA (1206bp) protein (402aa)
Putative uncharacterized protein n=2 Tax=Chlorogloeopsis sp. Cgs-089 RepID=C0KIE6_9CYAN
Xylose isomerase {ECO:0000313|EMBL:KJH73351.1}; TaxID=1618023 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales.;" source="Chroococcales cyanobacterium CENA595.;"
hypothetical protein
sw_11_scaffold_28_29
Rivularia sp. PCC 7116, Rivularia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

38734..40143
DNA (1410bp) protein (470aa)
Putative AP superfamily protein n=1 Tax=Rivularia sp. PCC 7116 RepID=K9RBH8_9CYAN
putative AP superfamily protein
Putative AP superfamily protein {ECO:0000313|EMBL:AFY54427.1}; TaxID=373994 species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Rivularia.;" source="Rivularia sp. PCC 7116.;"
Displaying items 1-30 of 34 in total

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