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sw_11_scaffold_305

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_11_scaffold_305_trna_2
unknown

Not on your lists

comp(558..632)
DNA (75bp)
transferRNA
sw_11_scaffold_305_trna_1
unknown

Not on your lists

comp(678..751)
DNA (74bp)
transferRNA
sw_11_scaffold_305_1
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(988..1461)
DNA (474bp) protein (158aa)
ribE; 6,7-dimethyl-8-ribityllumazine synthase; K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] id=24658991 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
ribE; 6,7-dimethyl-8-ribityllumazine synthase
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000255|HAMAP-Rule:MF_00178}; Short=DMRL synthase {ECO:0000255|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000255|HAMAP-Rule:MF_00178};; Short=Lumazine synthase
sw_11_scaffold_305_2
unknown

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1775..2284
DNA (510bp) protein (170aa)

This feature has no annotations

sw_11_scaffold_305_3
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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2478..3041
DNA (564bp) protein (188aa)
HIT domain-containing protein
HIT domain-containing protein id=24658989 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
HIT domain protein {ECO:0000313|EMBL:ABC45310.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (st
sw_11_scaffold_305_4
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

3075..4064
DNA (990bp) protein (330aa)
hypothetical protein
hypothetical protein id=24658988 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:ABC44318.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_11_scaffold_305_5
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(4081..4518)
DNA (438bp) protein (146aa)
yqgF; Holliday junction resolvase; K07447 putative holliday junction resolvase [EC:3.1.-.-] id=24658987 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=761659 specie
yqgF; Holliday junction resolvase
sw_11_scaffold_305_6
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(4579..4968)
DNA (390bp) protein (130aa)
hup; DNA-binding protein HU
hup; DNA-binding protein HU; K05788 integration host factor subunit beta id=24658986 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
DNA-binding protein HU {ECO:0000313|EMBL:CBH24185.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber
sw_11_scaffold_305_7
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(5014..7257)
DNA (2244bp) protein (748aa)
Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase {ECO:0000313|EMBL:CBH24184.1}; EC=3.1.7.2 {ECO:0000313|EMBL:CBH24184.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II
Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H829_SALRM
spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
sw_11_scaffold_305_8
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(7477..7704)
DNA (228bp) protein (76aa)
cspC; cold-shock protein
hypothetical protein id=24658395 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Cold shock-like protein cspC {ECO:0000313|EMBL:CBH25592.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter
sw_11_scaffold_305_9
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(8121..8669)
DNA (549bp) protein (183aa)
L-ribulose-5-phosphate 4-epimerase (EC:5.1.3.4)
L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:AEN72411.1}; EC=5.1.3.4 {ECO:0000313|EMBL:AEN72411.1};; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhod
L-ribulose-5-phosphate 4-epimerase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SDP1_RHOMR
sw_11_scaffold_305_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(9087..10757)
DNA (1671bp) protein (557aa)
Ribulokinase {ECO:0000256|SAAS:SAAS00183333}; EC=2.7.1.16 {ECO:0000256|SAAS:SAAS00183333};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Ribulokinase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MES1_RHOM4
Carbohydrate kinase, FGGY
sw_11_scaffold_305_11
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(10798..11844)
DNA (1047bp) protein (349aa)
Transcriptional regulator, LacI family n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MES9_RHOM4
LacI family transcriptional regulator rbh
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ACY47379.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rh
sw_11_scaffold_305_12
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(12106..12786)
DNA (681bp) protein (227aa)
Probable transaldolase {ECO:0000256|HAMAP-Rule:MF_00494}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00494, ECO:0000313|EMBL:CBH23272.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order
Probable transaldolase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H5G7_SALRM
tal; transaldolase
sw_11_scaffold_305_13
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(12847..14862)
DNA (2016bp) protein (672aa)
Transketolase {ECO:0000313|EMBL:CBH23271.1}; EC=2.2.1.1 {ECO:0000313|EMBL:CBH23271.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Saliniba
Transketolase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H5G6_SALRM
tktA; transketolase
sw_11_scaffold_305_14
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(15172..18435)
DNA (3264bp) protein (1088aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI0003624671
glycoside hydrolase family protein Tax=RBG_16_Planctomycetes_55_9_curated
glycoside hydrolase
sw_11_scaffold_305_15
unknown

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comp(18459..18731)
DNA (273bp) protein (91aa)

This feature has no annotations

sw_11_scaffold_305_16
Thermoanaerobacterium xylanolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18739..20118)
DNA (1380bp) protein (460aa)
L-arabinose isomerase {ECO:0000256|SAAS:SAAS00008909}; EC=5.3.1.4 {ECO:0000256|SAAS:SAAS00008909};; TaxID=29329 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterale
L-arabinose isomerase (EC:5.3.1.4)
L-arabinose isomerase n=1 Tax=Thermoanaerobacterium xylanolyticum RepID=B6CAM4_9FIRM
Displaying 18 items

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