ggKbase home page

sw_11_scaffold_3133

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_11_scaffold_3133_1
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(217..387)
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D553_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ30575.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-
hypothetical protein
sw_11_scaffold_3133_2
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(435..980)
DNA (546bp) protein (182aa)
UPF0218 protein C443_12281 n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KLJ4_HALAR
UPF0218 protein C443_12281 {ECO:0000256|HAMAP-Rule:MF_00590}; TaxID=1230451 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula argentine
hypothetical protein
sw_11_scaffold_3133_3
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1021..1221)
DNA (201bp) protein (67aa)
Transcription elongation factor Spt4 n=2 Tax=Halorhabdus RepID=C7NUL6_HALUD
DNA-directed RNA polymerase subunit E, RpoE2
Transcription elongation factor Spt4 {ECO:0000256|HAMAP-Rule:MF_00949}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabd
sw_11_scaffold_3133_4
halophilic archaeon J07HX5, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(1221..1553)
DNA (333bp) protein (111aa)
DNA-directed RNA polymerase, rpoE n=1 Tax=halophilic archaeon J07HX5 RepID=U1MZZ1_9EURY
DNA-directed RNA polymerase, rpoE {ECO:0000313|EMBL:ERG89775.1}; TaxID=1325472 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX5.;"
DNA-directed RNA polymerase subunit E'
sw_11_scaffold_3133_5
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(1743..3185)
DNA (1443bp) protein (481aa)
tif2g; translation initiation factor IF-2 subunit gamma; K03242 translation initiation factor 2 subunit 3 id=24649313 bin=uncultivated_archaeon_J07ABHX6 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultivated_archaeon_J07ABHX6
Translation initiation factor 2 subunit gamma {ECO:0000256|HAMAP-Rule:MF_00119}; aIF2-gamma {ECO:0000256|HAMAP-Rule:MF_00119}; eIF-2-gamma {ECO:0000256|HAMAP-Rule:MF_00119}; TaxID=1085028 species="Arc
tif2g; translation initiation factor IF-2 subunit gamma
sw_11_scaffold_3133_6
Halorubrum coriense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3332..3889
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Halorubrum coriense DSM 10284 RepID=M0ESH4_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ49369.1}; TaxID=1227466 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum coriense DSM 10284.;
hypothetical protein
sw_11_scaffold_3133_7
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

4470..5060
DNA (591bp) protein (197aa)
hypothetical protein id=24646226 bin=halophilic_archaeon_J07HX64 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=halophilic_archaeon_J07HX64
Uncharacterized protein {ECO:0000313|EMBL:ERH10406.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
hypothetical protein
sw_11_scaffold_3133_8
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5097..5720)
DNA (624bp) protein (208aa)
methyltransferase small; K07579 putative methylase id=24649311 bin=uncultivated_archaeon_J07ABHX6 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultivated_archaeon_J07ABHX6
Methyltransferase {ECO:0000313|EMBL:ERH10405.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
RNA methylase
sw_11_scaffold_3133_9
unknown

Not on your lists

comp(5848..6102)
DNA (255bp) protein (85aa)

This feature has no annotations

sw_11_scaffold_3133_10
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6283..6879
DNA (597bp) protein (199aa)
Putative membrane protein {ECO:0000313|EMBL:ERH10403.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
hypothetical protein; K08971 putative membrane protein id=24649309 bin=uncultivated_archaeon_J07ABHX6 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultivated_archaeon_J07ABHX6
DUF112 family protein
sw_11_scaffold_3133_11
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(7073..7369)
DNA (297bp) protein (99aa)
Putative uncharacterized protein n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QTA8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EFW91837.1}; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus.;" source="Haladaptatus paucihalophil
hypothetical protein
sw_11_scaffold_3133_12
Halorubrum sp. AJ67, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(7474..7890)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Halorubrum sp. AJ67 RepID=V6DRJ8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:CDK37828.1}; TaxID=1173487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum sp. AJ67.;"
hypothetical protein
sw_11_scaffold_3133_13
Halorubrum terrestre, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(7898..8131)
DNA (234bp) protein (78aa)
Uncharacterized protein n=3 Tax=Halorubrum RepID=M0D241_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ29561.1}; TaxID=1227486 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum terrestre JCM 10247.
DUF2892 family protein
sw_11_scaffold_3133_14
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

8810..9409
DNA (600bp) protein (200aa)
group 1 glycosyl transferase id=24645570 bin=halophilic_archaeon_J07HX64 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=halophilic_archaeon_J07HX64
Glycosyltransferase {ECO:0000313|EMBL:ERH09790.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
glycosyl transferase group 1
Displaying 14 items

View Taxonomy