ggKbase home page

sw_11_scaffold_57

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_11_scaffold_57_1
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1..1809
DNA (1809bp) protein (603aa)
PAS/PAC sensor protein (EC:2.7.13.3)
Bacterio-opsin activator n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D066_9EURY
Bacterio-opsin activator {ECO:0000313|EMBL:ELZ28901.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2
sw_11_scaffold_57_2
Haloterrigena thermotolerans, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1806..2678
DNA (873bp) protein (291aa)
Lycopene cyclase domain protein n=1 Tax=Haloterrigena thermotolerans DSM 11522 RepID=M0C509_9EURY
Lycopene cyclase domain protein {ECO:0000313|EMBL:ELZ18290.1}; TaxID=1227489 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena thermoto
lycopene cyclase domain protein
sw_11_scaffold_57_3
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2687..3835
DNA (1149bp) protein (383aa)
Brp-like protein n=1 Tax=Haloarcula japonica DSM 6131 RepID=M0LNF4_HALJP
Brp-like protein {ECO:0000313|EMBL:EMA33560.1}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula japonica DSM 6131.;"
beta-carotene 15,15'-monooxygenase
sw_11_scaffold_57_4
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3839..4759)
DNA (921bp) protein (307aa)
malate dehydrogenase (EC:1.1.1.37)
Malate dehydrogenase {ECO:0000313|EMBL:AGN01074.1}; EC=1.1.1.37 {ECO:0000313|EMBL:AGN01074.1};; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Salinarchaeum.
Malate dehydrogenase n=1 Tax=haloarchaeon 3A1_DGR RepID=T0SSR2_9EURY
sw_11_scaffold_57_5
Halorubrum lacusprofundi, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

4886..6271
DNA (1386bp) protein (462aa)
Sjogrens syndrome scleroderma autoantigen 1 n=1 Tax=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) RepID=B9LRU9_HALLT
hypothetical protein
Sjogrens syndrome scleroderma autoantigen 1 {ECO:0000313|EMBL:ACM57823.1}; TaxID=416348 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum l
sw_11_scaffold_57_6
unknown

Not on your lists

6295..6552
DNA (258bp) protein (86aa)

This feature has no annotations

sw_11_scaffold_57_7
Halopiger xanaduensis, Halopiger, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6753..9182)
DNA (2430bp) protein (810aa)
Helicase domain-containing protein n=1 Tax=Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) RepID=F8D2X0_HALXS
Helicase domain-containing protein {ECO:0000313|EMBL:AEH36113.1}; TaxID=797210 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halopiger.;" source="Halopiger xanaduensis (s
helicase
sw_11_scaffold_57_8
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(9287..9904)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0ME97_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA42740.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
dolichol kinase
sw_11_scaffold_57_9
Natrialba asiatica, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(9901..11718)
DNA (1818bp) protein (606aa)
Glycyl-tRNA ligase {ECO:0000313|EMBL:ELY98029.1}; EC=6.1.1.14 {ECO:0000313|EMBL:ELY98029.1};; TaxID=29540 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" sourc
Glycyl-tRNA ligase n=1 Tax=Natrialba asiatica (strain ATCC 700177 / DSM 12278 / JCM 9576 / FERM P-10747 / NBRC 102637 / 172P1) RepID=M0AHM4_NATA1
glycyl-tRNA synthetase
sw_11_scaffold_57_10
Natronorubrum sulfidifaciens, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11711..12568)
DNA (858bp) protein (286aa)
Signal transduction protein with CBS domains n=1 Tax=Natronorubrum sulfidifaciens JCM 14089 RepID=L9WA28_9EURY
Signal transduction protein with CBS domains {ECO:0000313|EMBL:ELY46340.1}; TaxID=1230460 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natronoru
hypothetical protein
sw_11_scaffold_57_11
Halorubrum distributum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(12989..13402)
DNA (414bp) protein (138aa)
Uncharacterized protein n=2 Tax=Halorubrum distributum RepID=M0EE62_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ50889.1}; TaxID=1227468 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum distributum JCM 1011
hypothetical protein
sw_11_scaffold_57_12
Haloterrigena turkmenica, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

13442..13732
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) RepID=D2RRV3_HALTV
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB62570.1}; TaxID=543526 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena turkmenica (strai
sw_11_scaffold_57_13
Halorubrum distributum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(13880..14404)
DNA (525bp) protein (175aa)
Uncharacterized protein n=2 Tax=Halorubrum distributum RepID=M0EDP6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ50888.1}; TaxID=1227468 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum distributum JCM 1011
hypothetical protein
sw_11_scaffold_57_14
Halorubrum lacusprofundi, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14492..14890)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) RepID=B9LQR8_HALLT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM55670.1}; Flags: Precursor;; TaxID=416348 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum la
sw_11_scaffold_57_15
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14880..16238)
DNA (1359bp) protein (453aa)
ABC-type oligopeptide transporter, ATP-binding protein OppF (TC 3.A.1.5.1) n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PFA3_9EURY
oppF; ABC-type oligopeptide transporter, ATP-binding protein OppF (TC 3.A.1.5.1)
ABC-type oligopeptide transporter, ATP-binding protein OppF (TC 3.A.1.5.1) {ECO:0000313|EMBL:CCQ33943.1}; Oligopeptide ABC transporter ATP-binding domain containing protein {ECO:0000313|EMBL:ERJ05733.
sw_11_scaffold_57_16
Halorubrum distributum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16235..17389)
DNA (1155bp) protein (385aa)
Peptide ABC transporter ATPase n=2 Tax=Halorubrum distributum RepID=M0EBN9_9EURY
Peptide ABC transporter ATPase {ECO:0000313|EMBL:ELZ45180.1}; TaxID=1227467 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum distributum J
peptide ABC transporter ATPase
sw_11_scaffold_57_17
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(17389..18945)
DNA (1557bp) protein (519aa)
dppC2; dipeptide/oligopeptide/nickel ABC transporter permease; K02034 peptide/nickel transport system permease protein id=24633379 bin=Haloquadratum_walsbyi_J07HQW2 species=Haloquadratum walsbyi genus=Haloquadratum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Haloquadratum_walsbyi_J07HQW2
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:ERG96167.1}; TaxID=1238425 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; H
dppC2; hypothetical protein
sw_11_scaffold_57_18
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(18945..20036)
DNA (1092bp) protein (364aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Haloquadratum walsbyi J07HQW1 RepID=U1N2L7_9EURY
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:ERG90750.1}; TaxID=1238424 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; H
dppB2; ABC-type transport system permease protein (probable substrate dipeptide/oligopeptide/nickel)
sw_11_scaffold_57_19
Halorubrum distributum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20234..22126)
DNA (1893bp) protein (631aa)
Extracellular solute-binding protein family 5 n=2 Tax=Halorubrum distributum RepID=M0EWU4_9EURY
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:ELZ50894.1}; TaxID=1227468 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubru
extracellular solute-binding protein family 5
sw_11_scaffold_57_20
Halorubrum kocurii, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

22344..22769
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Halorubrum kocurii JCM 14978 RepID=M0NZM8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA63286.1}; TaxID=1230456 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum kocurii JCM 14978.;"
putative DNA-binding protein with PD1-like DNA-binding motif
sw_11_scaffold_57_21
Halorubrum sp. SP9, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

22766..27817
DNA (5052bp) protein (1684aa)
DNA polymerase II large subunit {ECO:0000256|HAMAP-Rule:MF_00324}; Short=Pol II {ECO:0000256|HAMAP-Rule:MF_00324};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00324};; TaxID=1537267 species="Archaea; Eurya
DNA polymerase II large subunit n=1 Tax=Halorubrum californiensis DSM 19288 RepID=M0E4A2_9EURY
DNA polymerase type II, large subunit
sw_11_scaffold_57_22
Natrinema pallidum, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

28027..28335
DNA (309bp) protein (103aa)
Small CPxCG-related zinc finger protein n=1 Tax=Natrinema pallidum DSM 3751 RepID=L9YXS3_9EURY
Small CPxCG-related zinc finger protein {ECO:0000313|EMBL:ELY78919.1}; TaxID=1227495 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema pallidum
small CPxCG-related zinc finger protein
sw_11_scaffold_57_23
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

28423..28881
DNA (459bp) protein (153aa)
Thioesterase n=1 Tax=Halobiforma lacisalsi AJ5 RepID=M0LPU3_9EURY
Thioesterase {ECO:0000313|EMBL:EMA34050.1}; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma lacisalsi AJ5.;"
acyl-CoA hydrolase
sw_11_scaffold_57_24
Natronolimnobius innermongolicus, Natronolimnobius, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

29606..30193
DNA (588bp) protein (196aa)
Leucyl aminopeptidase (Aminopeptidase T) n=1 Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NKT6_HALBP
Peptidase M29 aminopeptidase II {ECO:0000313|EMBL:ELY57050.1}; TaxID=1227499 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronolimnobius.;" source="Natronolimnobius in
leucyl aminopeptidase (aminopeptidase t)
sw_11_scaffold_57_25
unknown

Not on your lists

30278..30400
DNA (123bp) protein (41aa)

This feature has no annotations

sw_11_scaffold_57_26
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(30402..30956)
DNA (555bp) protein (185aa)
HoxA-like transcriptional regulator n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CP64_9EURY
HoxA-like transcriptional regulator {ECO:0000313|EMBL:ELZ23669.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex car
HoxA transcriptional regulator
sw_11_scaffold_57_27
Natrinema versiforme, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(31029..32390)
DNA (1362bp) protein (454aa)
NADH:flavin oxidoreductase n=1 Tax=Natrinema versiforme JCM 10478 RepID=L9XTZ0_9EURY
NADH:flavin oxidoreductase
NADH:flavin oxidoreductase {ECO:0000313|EMBL:ELY65255.1}; TaxID=1227496 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema versiforme JCM 10478.
sw_11_scaffold_57_28
Halovivax asiaticus, Halovivax, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


32702..34225
DNA (1524bp) protein (508aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00282}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00282, ECO:0000313|EMBL:ELZ09328.1};; Phenylalanyl-tRNA synthetase alpha subunit {ECO
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Halovivax asiaticus JCM 14624 RepID=M0BG99_9EURY
phenylalanyl-tRNA synthetase, alpha subunit
sw_11_scaffold_57_29
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


34225..36075
DNA (1851bp) protein (617aa)
pheT; phenylalanine--tRNA ligase beta subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00284}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00284};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00284};
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XU55_NATM8
sw_11_scaffold_57_30
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(36113..36259)
DNA (147bp) protein (49aa)
pyrD; dihydroorotate dehydrogenase 2 (EC:1.3.3.1)
Dihydroorotate dehydrogenase (quinone) {ECO:0000255|HAMAP-Rule:MF_00225}; EC=1.3.5.2 {ECO:0000255|HAMAP-Rule:MF_00225};; DHOdehase {ECO:0000255|HAMAP-Rule:MF_00225}; Short=DHOD {ECO:0000255|HAMAP-Rule
dihydroorotate dehydrogenase n=1 Tax=Halorubrum sp. T3 RepID=UPI00037EFE40
Displaying 30 items

View Taxonomy