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SW_11_UNK

In projects: SW_11  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 18.10 Longest contig: 206.16 Kbp Bin length: 36.83 Mbp GC content: 60.58 %
Contigs count: 13823 Features count: 48125 rRNAs count: 12 tRNAs count: 554

Genome completeness

megabin RP 48 / 55 MC: 40 BSCG 43 / 51 MC: 37 ASCG 38 / 38 MC: 38
Displaying items 301-350 of 13823 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_11_scaffold_15313 2 1041 bp 54.66 4.42 99.42
sw_11_scaffold_15783
Species: Salinibacter ruber (50%)
2 1018 bp 48.53 4.42 71.91
sw_11_scaffold_14865 3 1064 bp 54.42 4.42 88.82
sw_11_scaffold_13743 1 1131 bp 51.72 4.42 21.22
sw_11_scaffold_14463 2 1085 bp 40.46 4.42 55.02
sw_11_scaffold_10796 4 2188 bp 35.51 4.43 97.35
sw_11_scaffold_11729
Species: Leptolyngbya sp. PCC 7375 (100%)
2 1263 bp 35.39 4.43 54.87
sw_11_scaffold_4810 5 2368 bp 50.21 4.43 83.49
sw_11_scaffold_32294 2 1310 bp 48.17 4.43 31.60
sw_11_scaffold_6679
Class: Halobacteria (100%)
3 1896 bp 43.09 4.43 90.51
sw_11_scaffold_23761
Species: Haloferax lucentense (100%)
1 1581 bp 47.25 4.43 36.05
sw_11_scaffold_4878 4 2347 bp 43.16 4.43 94.46
sw_11_scaffold_19650 6 2463 bp 32.36 4.43 62.73
sw_11_scaffold_15367 2 1038 bp 43.16 4.43 78.61
sw_11_scaffold_13786
Species: Nostoc sp. PCC 7524 (100%)
1 1128 bp 63.83 4.43 99.73
sw_11_scaffold_7550 4 1739 bp 50.37 4.43 61.41
sw_11_scaffold_15417 2 1035 bp 41.06 4.44 100.29
sw_11_scaffold_13830
Species: Tetraodon nigroviridis (100%)
1 1125 bp 56.00 4.44 54.13
sw_11_scaffold_13057
Species: Anabaena variabilis (66.67%)
3 1172 bp 30.12 4.44 105.46
sw_11_scaffold_7226
Domain: Bacteria (50%)
4 4109 bp 37.19 4.45 88.05
sw_11_scaffold_13472 1 1145 bp 39.48 4.45 99.83
sw_11_scaffold_20027 3 1461 bp 49.08 4.45 82.75
sw_11_scaffold_12428
Species: Halarchaeum acidiphilum (50%)
2 1212 bp 36.55 4.46 69.06
sw_11_scaffold_13159 2 1166 bp 47.00 4.46 74.87
sw_11_scaffold_15493
Species: Carboxydothermus hydrogenoformans (100%)
1 1032 bp 53.97 4.46 85.17
sw_11_scaffold_13421
Class: Halobacteria (66.67%)
3 2061 bp 46.97 4.46 55.17
sw_11_scaffold_15511 3 1031 bp 40.16 4.46 78.27
sw_11_scaffold_13916 3 1120 bp 47.59 4.46 53.84
sw_11_scaffold_13492 3 2554 bp 45.61 4.46 45.81
sw_11_scaffold_14645 2 1076 bp 42.38 4.46 50.46
sw_11_scaffold_24840 4 1343 bp 33.06 4.47 97.84
sw_11_scaffold_32647
Species: Moumouvirus (50%)
2 1118 bp 28.62 4.47 101.43
sw_11_scaffold_5662
Order: Haloferacales (50%)
4 2125 bp 49.55 4.47 77.08
sw_11_scaffold_14693 1 1073 bp 47.34 4.47 5.59
sw_11_scaffold_14720 2 1072 bp 40.95 4.48 87.87
sw_11_scaffold_14728
Species: Halobacterium sp. DL1 (50%)
2 1071 bp 41.74 4.48 92.16
sw_11_scaffold_9918
Species: RBG_16_Micrarchaeota_49_10_curated (100%)
1 1430 bp 45.94 4.48 99.86
sw_11_scaffold_11367
Species: Haloterrigena limicola (50%)
2 1294 bp 36.79 4.48 46.60
sw_11_scaffold_18739
Species: Ralstonia solanacearum (50%)
2 1318 bp 60.09 4.48 99.92
sw_11_scaffold_15605
Species: Natronomonas moolapensis (100%)
1 1026 bp 46.98 4.48 92.40
sw_11_scaffold_6140 3 3528 bp 43.82 4.48 90.82
sw_11_scaffold_11927
Species: Natrialba magadii (50%)
2 1249 bp 49.48 4.48 74.22
sw_11_scaffold_28304
Species: Galdieria sulphuraria (50%)
2 1248 bp 53.77 4.49 72.84
sw_11_scaffold_11946 2 1247 bp 53.89 4.49 89.01
sw_11_scaffold_30716
Species: Mycobacterium phage ChrisnMich (50%)
2 1155 bp 47.62 4.50 62.60
sw_11_scaffold_14089 1 1110 bp 45.86 4.50 74.32
sw_11_scaffold_16179 1 1001 bp 59.94 4.50 80.02
sw_11_scaffold_11631 4 2045 bp 39.27 4.50 75.70
sw_11_scaffold_20216 5 1442 bp 32.59 4.51 100.07
sw_11_scaffold_11566 4 2060 bp 50.49 4.51 57.67
Displaying items 301-350 of 13823 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.