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sw_11_scaffold_1474

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Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_11_scaffold_1474_1
Caldithrix abyssi, Caldithrix, Bacteria

Not on your lists

comp(315..1115)
DNA (801bp) protein (267aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {EC
ligA; DNA ligase, NAD-dependent (EC:6.5.1.2)
DNA ligase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XPH6_9BACT
sw_11_scaffold_1474_2
unknown

Not on your lists

1722..2027
DNA (306bp) protein (102aa)

This feature has no annotations

sw_11_scaffold_1474_3
Persephonella marina, Persephonella, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

comp(1969..2601)
DNA (633bp) protein (211aa)
ligA; DNA ligase, NAD-dependent (EC:6.5.1.2)
DNA ligase {ECO:0000255|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000255|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000255|HAMAP-Rule:MF_01588}; TaxID=123214 species="Bacteria
DNA ligase n=1 Tax=Persephonella marina (strain DSM 14350 / EX-H1) RepID=DNLJ_PERMH
sw_11_scaffold_1474_4
unknown

Not on your lists

comp(3363..3515)
DNA (153bp) protein (51aa)

This feature has no annotations

sw_11_scaffold_1474_5
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(3508..3801)
DNA (294bp) protein (98aa)
DNA polymerase beta domain-containing protein; K07075 Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Putative nucleotidyltransferase id=4121375 bin=GWF2_Bacteroidetes_41_31 species=Aequorivita sublithincola genus=Aequorivita taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
DNA polymerase beta domain-containing protein
sw_11_scaffold_1474_6
unknown

Not on your lists

3964..4161
DNA (198bp) protein (66aa)

This feature has no annotations

sw_11_scaffold_1474_7
unknown

Not on your lists

comp(4670..4765)
DNA (96bp) protein (32aa)

This feature has no annotations

sw_11_scaffold_1474_8
unknown

Not on your lists

comp(4880..5041)
DNA (162bp) protein (54aa)

This feature has no annotations

sw_11_scaffold_1474_9
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(5297..5530)
DNA (234bp) protein (78aa)
4a-hydroxytetrahydrobiopterin dehydratase {ECO:0000256|SAAS:SAAS00118034}; EC=4.2.1.96 {ECO:0000256|SAAS:SAAS00118034};; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flamm
pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96)
Pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JT73_9BACT
sw_11_scaffold_1474_10
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(5674..6684)
DNA (1011bp) protein (337aa)
endoglucanase n=1 Tax=Echinicola pacifica RepID=UPI000373F83F
peptidase family protein
Peptidase family protein {ECO:0000313|EMBL:AGA80819.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strai
sw_11_scaffold_1474_11
Leptospira interrogans, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(6763..7281)
DNA (519bp) protein (173aa)
Leucine rich repeat protein n=4 Tax=Leptospira interrogans RepID=K8IQA9_LEPIR
Leucine rich repeat protein {ECO:0000313|EMBL:EKR57108.1}; TaxID=1049938 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira interrogans str. UI 12758.;"
small GTP-binding protein
sw_11_scaffold_1474_12
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(7307..8383)
DNA (1077bp) protein (359aa)
Leucine-rich repeat-containing protein 1 n=1 Tax=Microscilla marina ATCC 23134 RepID=A2A0K7_9BACT
Leucine-rich repeat-containing protein 1 {ECO:0000313|EMBL:EAY23831.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marin
lipoprotein
sw_11_scaffold_1474_13
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8485..8682)
DNA (198bp) protein (66aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|H
lysyl-tRNA synthetase n=1 Tax=Spirosoma spitsbergense RepID=UPI00037F03A3
lysyl-tRNA synthetase
sw_11_scaffold_1474_14
GWF2_Bacteroidetes_43_11_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8679..9857)
DNA (1179bp) protein (393aa)
lysS; lysyl-tRNA synthetase (EC:6.1.1.6); K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] Tax=GWF2_Bacteroidetes_43_11_curated
Lysine--tRNA ligase id=1739125 bin=GWE2_Bacteroidetes_42_24 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
lysyl-tRNA synthetase
sw_11_scaffold_1474_15
Polaribacter sp. Hel1_85, Polaribacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9970..10845)
DNA (876bp) protein (292aa)
Conserved protein of DIM6/NTAB family n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YV81_AEQSU
Flavin reductase {ECO:0000313|EMBL:KGL62742.1}; TaxID=1250005 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Polaribacter.;" source="Polaribacter sp. Hel1_85.;"
hypothetical protein
sw_11_scaffold_1474_16
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10872..12059)
DNA (1188bp) protein (396aa)
fumarylacetoacetate hydrolase n=1 Tax=Pedobacter agri RepID=UPI00029A0A68
Fumarylacetoacetate hydrolase {ECO:0000313|EMBL:ETZ23273.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter
fumarylacetoacetate (FAA) hydrolase
sw_11_scaffold_1474_17
unknown

Not on your lists

comp(12059..12418)
DNA (360bp) protein (120aa)

This feature has no annotations

sw_11_scaffold_1474_18
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(12511..12843)
DNA (333bp) protein (111aa)
hypothetical protein id=7716732 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP
Uncharacterized protein {ECO:0000313|EMBL:ELR70392.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
hypothetical protein
sw_11_scaffold_1474_19
unknown

Not on your lists

13222..13695
DNA (474bp) protein (158aa)

This feature has no annotations

sw_11_scaffold_1474_20
Indibacter alkaliphilus, Indibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13779..14936)
DNA (1158bp) protein (386aa)
Cystathionine gamma-lyase {ECO:0000313|EMBL:EOZ95175.1}; EC=4.4.1.1 {ECO:0000313|EMBL:EOZ95175.1};; TaxID=1189612 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae.;" sourc
cystathionine beta-lyase/cystathionine gamma-synthase (EC:4.4.1.1)
Cystathionine gamma-lyase n=1 Tax=Indibacter alkaliphilus LW1 RepID=S2DDX7_9BACT
sw_11_scaffold_1474_21
Caldithrix abyssi, Caldithrix, Bacteria

Not on your lists

comp(15047..16297)
DNA (1251bp) protein (417aa)
Uncharacterized conserved protein UCP033563 n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XUI1_9BACT
Uncharacterized conserved protein UCP033563 {ECO:0000313|EMBL:EHO42807.1}; TaxID=880073 species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
hypothetical protein
sw_11_scaffold_1474_22
Saprospira grandis, Saprospira, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16439..17398)
DNA (960bp) protein (320aa)
serA; D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:AFC23340.1}; EC=1.1.1.95 {ECO:0000313|EMBL:AFC23340.1};; TaxID=984262 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sapro
hypothetical protein n=1 Tax=Lewinella cohaerens RepID=UPI00037F80C4
sw_11_scaffold_1474_23
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17376..18530)
DNA (1155bp) protein (385aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505};; Phosphohydroxythreonine
Phosphoserine aminotransferase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KVX0_SOLCM
phosphoserine aminotransferase
Displaying 23 items

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