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sw_11_scaffold_1530

Search features with annotation key words

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_11_scaffold_1530_1
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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2..400
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Lewinella cohaerens RepID=UPI000382E7C4
glyceraldehyde-3-phosphate dehydrogenase
Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase {ECO:0000313|EMBL:AFD06395.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingo
sw_11_scaffold_1530_2
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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482..874
DNA (393bp) protein (131aa)
Signal recognition particle protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQD6_CHIPD
Suspect SCG annotation. See neighboring gene [sw_11_scaffold_1530_3].
signal recognition particle protein
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobac
sw_11_scaffold_1530_3
CG_Bacteroid_01, Bacteroidetes, Bacteria

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829..1812
DNA (984bp) protein (328aa)
Signal recognition particle protein n=2 Tax=Bacteroidales RepID=K0X031_9PORP
signal recognition protein; K03106 signal recognition particle subunit SRP54 Tax=CG_Bacteroid_01
signal recognition particle protein
sw_11_scaffold_1530_4
Phaeodactylibacter xiamenensis, Phaeodactylibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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2176..2874
DNA (699bp) protein (233aa)
30S ribosomal protein S16 n=1 Tax=Anaerophaga thermohalophila RepID=UPI0003684B19
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1524460 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Phaeodactylibacter.;" source="Phaeoda
30S ribosomal protein S16
sw_11_scaffold_1530_5
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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2908..3474
DNA (567bp) protein (189aa)
Ribosome maturation factor RimM n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YG78_9SPHI
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriace
16S rRNA processing protein RimM
sw_11_scaffold_1530_6
Aphanocapsa montana, Aphanocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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3543..4226
DNA (684bp) protein (228aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltrans
hypothetical protein n=1 Tax=Lewinella cohaerens RepID=UPI000370B609
tRNA (guanine-N1)-methyltransferase
sw_11_scaffold_1530_7
Myroides odoratus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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4302..4658
DNA (357bp) protein (119aa)
50S ribosomal protein L19 n=2 Tax=Myroides RepID=H1Z8F4_MYROD
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=929704 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides
rplS; ribosomal protein L19, bacterial type
sw_11_scaffold_1530_8
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

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4859..5740
DNA (882bp) protein (294aa)
DNA polymerase IV id=4443381 bin=GWC2_Bacteroidetes_40_22 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
nucleotidyltransferase/DNA polymerase involved in DNA repair Tax=GWA2_Bacteroidetes_40_15_curated
DNA polymerase IV
sw_11_scaffold_1530_9
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

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5679..6050
DNA (372bp) protein (124aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113, ECO:0000256|SAAS:SAAS00019792};; TaxID=1304833 specie
DNA polymerase IV n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQ34_CHIPD
DNA-directed DNA polymerase
sw_11_scaffold_1530_10
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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6216..7409
DNA (1194bp) protein (398aa)
Lipase class 3 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IBJ6_FLUTR
Lipase class 3 {ECO:0000313|EMBL:GAL86215.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
lipase class 3
sw_11_scaffold_1530_11
Mycobacterium colombiense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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7714..8625
DNA (912bp) protein (304aa)
Putative uncharacterized protein n=1 Tax=Mycobacterium tusciae JS617 RepID=H1JWW2_9MYCO
Uncharacterized protein {ECO:0000313|EMBL:EJO89987.1}; TaxID=1041522 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source=
hypothetical protein
sw_11_scaffold_1530_12
Phaeodactylibacter xiamenensis, Phaeodactylibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9949..10245)
DNA (297bp) protein (99aa)
hypothetical protein (EC:1.-.-.-)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037078C1
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:KGE89876.1}; TaxID=1524460 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Phaeodactylibacter.;" source=
sw_11_scaffold_1530_13
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(10242..10526)
DNA (285bp) protein (95aa)
Adenosyl-chloride synthase {ECO:0000313|EMBL:KHJ38386.1}; EC=2.5.1.94 {ECO:0000313|EMBL:KHJ38386.1};; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacte
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L238_HALH1
hypothetical protein
sw_11_scaffold_1530_14
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11126..11506
DNA (381bp) protein (127aa)
PhoH family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9N6_NIAKG
PhoH family protein
PhoH family protein {ECO:0000313|EMBL:AEW00229.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (stra
Displaying 14 items

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