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sw_11_scaffold_278

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Displaying 16 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_11_scaffold_278_1
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2..778
DNA (777bp) protein (259aa)
GDP-L-fucose synthase {ECO:0000256|HAMAP-Rule:MF_00956}; EC=1.1.1.271 {ECO:0000256|HAMAP-Rule:MF_00956};; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase {ECO:0000256|HAMAP-Rule:MF_00956}; TaxI
GDP-L-fucose synthase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KL73_SOLCM
nucleoside-diphosphate-sugar epimerase
sw_11_scaffold_278_2
Hymenobacter sp. APR13, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(969..1220)
DNA (252bp) protein (84aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AII52675.1}; TaxID=1356852 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. APR13.;"
sw_11_scaffold_278_3
Pontibacter sp. BAB1700, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1210..1551)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Nafulsella turpanensis RepID=UPI00034B8D04
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1144253 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;"
spoIIAA; anti-sigma F factor antagonist
sw_11_scaffold_278_4
Coprobacter sp. 177, Coprobacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1874..2575
DNA (702bp) protein (234aa)
23S rRNA m(5)u-1939 methyltransferase (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Tannerella sp. CAG:118 RepID=R5I7D4_9PORP
RNA methyltransferase {ECO:0000313|EMBL:KHM45728.1}; TaxID=1572646 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Coprobacter.;" source="Coprobacter sp. 177.;"
sw_11_scaffold_278_5
Prevotella sp. CAG:1058, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2565..3203
DNA (639bp) protein (213aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Prevotella sp. CAG:1058 RepID=R5CQQ8_9BACT
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:CCX66026.1}; TaxID=1262918 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples
23S rRNA (uracil-5-)-methyltransferase RumA
sw_11_scaffold_278_6
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3206..3592
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CE53_SPHS2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ77814.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobact
sw_11_scaffold_278_7
Tamlana nanhaiensis, Tamlana, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3706..4809
DNA (1104bp) protein (368aa)
tRNA (Guanine-N(7)-)-methyltransferase n=1 Tax=Leeuwenhoekiella blandensis (strain CECT 7118 / CCUG 51940 / MED217) RepID=A3XL67_LEEBM
glycosyltransferase
Glycosyltransferase {ECO:0000313|EMBL:KJD33814.1}; TaxID=1382798 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tamlana.;" source="Tamlana nanhaiensis.;"
sw_11_scaffold_278_8
Saprospira grandis, Saprospira, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4806..5267)
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Flavobacterium sp. MS220-5C RepID=UPI000346E014
Thiol:disulfide interchange protein {ECO:0000313|EMBL:EJF52992.1}; Flags: Precursor;; TaxID=694433 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Saprospira.;"
thioredoxin
sw_11_scaffold_278_9
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5301..6152)
DNA (852bp) protein (284aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=760192 species="Bacteria; Bacte
Glutamate racemase n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KQR9_HALH1
glutamate racemase
sw_11_scaffold_278_10
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6364..7023)
DNA (660bp) protein (220aa)
Outer membrane chaperone Skp (OmpH) id=4518341 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
outer membrane chaperone Skp; K06142 outer membrane protein Tax=GWA2_Bacteroidetes_32_17_curated
outer membrane protein
sw_11_scaffold_278_11
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(7146..7694)
DNA (549bp) protein (183aa)
Outer membrane chaperone Skp (OmpH) n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PMK7_CHIPD
outer membrane chaperone Skp; K06142 outer membrane protein Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
outer membrane chaperone Skp
sw_11_scaffold_278_12
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7714..10344)
DNA (2631bp) protein (877aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO42847.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacte
Outer membrane protein assembly complex, YaeT protein id=4518343 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
surface antigen (D15)
sw_11_scaffold_278_13
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10344..11111)
DNA (768bp) protein (256aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobac
UDP diphosphate synthase (EC:2.5.1.31)
Isoprenyl transferase n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QMK1_SPILD
sw_11_scaffold_278_14
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11125..11967)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L6P7_HALH1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE50878.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobact
sw_11_scaffold_278_15
Saprospira grandis, Saprospira, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12094..13011)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Saprospira grandis (strain Lewin) RepID=H6L3V7_SAPGL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFC23839.1}; TaxID=984262 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Saprospira.;" source="Saprospira grandis (st
sw_11_scaffold_278_16
unknown

Not on your lists

comp(13501..13647)
DNA (147bp) protein (49aa)

This feature has no annotations

Displaying 16 items

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