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sw_11_scaffold_908

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_11_scaffold_908_1
Saccharicrinis fermentans, Saccharicrinis, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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2..382
DNA (381bp) protein (127aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-t
phenylalanyl-tRNA synthetase subunit alpha n=1 Tax=Marinilabilia salmonicolor RepID=UPI00029A221B
phenylalanyl-tRNA synthetase subunit alpha
sw_11_scaffold_908_2
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

435..1298
DNA (864bp) protein (288aa)
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Pontibacter roseus RepID=UPI00036CDC89
3-hydroxybutyryl-CoA dehydrogenase rbh
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:AKD02627.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;
sw_11_scaffold_908_3
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

1373..2404
DNA (1032bp) protein (344aa)
Radical SAM domain protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ED55_RUNSL
radical SAM protein
Radical SAM domain protein {ECO:0000313|EMBL:AEI46703.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 2
sw_11_scaffold_908_4
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(2470..3042)
DNA (573bp) protein (191aa)
ribosome recycling factor n=1 Tax=Anaerophaga thermohalophila RepID=UPI000237D19B
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1122941 species="Bacteria;
ribosome recycling factor
sw_11_scaffold_908_5
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(3594..4310)
DNA (717bp) protein (239aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197
uridylate kinase (EC:2.7.4.22)
uridylate kinase n=1 Tax=Flexithrix dorotheae RepID=UPI00035D0E0A
sw_11_scaffold_908_6
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(4539..5372)
DNA (834bp) protein (278aa)
Elongation factor Ts n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FT66_9SPHI
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia;
translation elongation factor Ts (EF-Ts)
sw_11_scaffold_908_7
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(5381..6301)
DNA (921bp) protein (307aa)
30S ribosomal protein S2 n=1 Tax=Niabella aurantiaca RepID=UPI00037B2D3F
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumi
30S ribosomal protein S2
sw_11_scaffold_908_8
Phaeodactylibacter xiamenensis, Phaeodactylibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(6366..6752)
DNA (387bp) protein (129aa)
30S ribosomal protein S9 n=1 Tax=Segetibacter koreensis RepID=UPI000376B685
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1524460 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Phaeoda
30S ribosomal protein S9
sw_11_scaffold_908_9
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(6761..7204)
DNA (444bp) protein (148aa)
50S ribosomal protein L13 n=2 Tax=Sphingobacterium spiritivorum RepID=C2FT69_9SPHI
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sp
50S ribosomal protein L13
sw_11_scaffold_908_10
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(7777..8190)
DNA (414bp) protein (138aa)
Peptidase membrane zinc metallopeptidase n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CEP2_SPHS2
peptidase membrane zinc metallopeptidase
Peptidase membrane zinc metallopeptidase {ECO:0000313|EMBL:ADZ77856.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" so
sw_11_scaffold_908_11
RIFOXYD12_FULL_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(8379..8990)
DNA (612bp) protein (204aa)
Restriction endonuclease BglII id=4636717 bin=GWF2_Ignavibacteria_35_20 species=Tannerella forsythia genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
restriction endonuclease BglII Tax=RIFOXYD12_FULL_Ignavibacteria_36_8_curated
restriction endonuclease BglII
sw_11_scaffold_908_12
Tannerella forsythia, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8987..9955)
DNA (969bp) protein (323aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1307833 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerel
DNA (Cytosine-5-)-methyltransferase n=1 Tax=Tannerella forsythia (strain ATCC 43037 / JCM 10827 / FDC 338) RepID=G8UI05_TANFA
DNA (cytosine-5-)-methyltransferase
sw_11_scaffold_908_13
unknown

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comp(10092..10166)
DNA (75bp) protein (25aa)

This feature has no annotations

Displaying 13 items

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