ggKbase home page

sw_11_scaffold_47

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_11_scaffold_47_1
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(27..896)
DNA (870bp) protein (290aa)
hypothetical protein
hypothetical protein; K08977 putative membrane protein id=24659381 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:CBH24545.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_11_scaffold_47_2
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

1119..1799
DNA (681bp) protein (227aa)
hypothetical protein
hypothetical protein id=24659382 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:CBH24544.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_11_scaffold_47_3
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

1908..2465
DNA (558bp) protein (186aa)
dcd; deoxycytidine triphosphate deaminase; K01494 dCTP deaminase [EC:3.5.4.13] id=24659383 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146};; TaxID=309807 species="B
dcd; deoxycytidine triphosphate deaminase
sw_11_scaffold_47_4
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

2515..2808
DNA (294bp) protein (98aa)
hypothetical protein
hypothetical protein id=24659384 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:CBH24547.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_11_scaffold_47_5
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

3149..3493
DNA (345bp) protein (115aa)
hypothetical protein
hypothetical protein id=24659387 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:CBH24550.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_11_scaffold_47_6
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(3553..4542)
DNA (990bp) protein (330aa)
Voltage-dependent potassium channel, beta subunit n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SE43_RHOMR
voltage-dependent potassium channel subunit beta
Voltage-dependent potassium channel, beta subunit {ECO:0000313|EMBL:AEN72035.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;"
sw_11_scaffold_47_7
unknown

Not on your lists

5115..5273
DNA (159bp) protein (53aa)

This feature has no annotations

sw_11_scaffold_47_8
unknown

Not on your lists

5292..5543
DNA (252bp) protein (84aa)

This feature has no annotations

sw_11_scaffold_47_9
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(5968..6711)
DNA (744bp) protein (248aa)
clpP; ATP-dependent Clp protease proteolytic subunit; K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] id=24659389 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopep
clpP; ATP-dependent Clp protease proteolytic subunit
sw_11_scaffold_47_10
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6984..8279
DNA (1296bp) protein (432aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QIK5_AZOSU
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AEV26417.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae;
sw_11_scaffold_47_11
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8326..9969)
DNA (1644bp) protein (548aa)
hypothetical protein n=1 Tax=Pseudomonas nitroreducens RepID=UPI0002E3E14F
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:AIB14709.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilens
sw_11_scaffold_47_12
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

10612..10953
DNA (342bp) protein (114aa)
lppC; acid phosphatase; K01078 acid phosphatase [EC:3.1.3.2] id=24659390 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Acid phosphatase {ECO:0000313|EMBL:CBH24553.1}; EC=3.1.3.2 {ECO:0000313|EMBL:CBH24553.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salin
aphA; acid phosphatase
sw_11_scaffold_47_13
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

11048..12739
DNA (1692bp) protein (564aa)
hypothetical protein; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] id=24659391 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
hypothetical protein
DNA polymerase III epsilon subunit {ECO:0000313|EMBL:CBH24554.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salini
sw_11_scaffold_47_14
Cesiribacter andamanensis, Cesiribacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

12822..14702
DNA (1881bp) protein (627aa)
Magnesium chelatase subunit D n=1 Tax=Cesiribacter andamanensis AMV16 RepID=M7N536_9BACT
Magnesium chelatase subunit D {ECO:0000313|EMBL:EMR02321.1}; TaxID=1279009 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Cesiribacter.;" source="Cesiribacter andamanens
von Willebrand factor A
sw_11_scaffold_47_15
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

14892..16565
DNA (1674bp) protein (558aa)
Exopolyphosphatase {ECO:0000313|EMBL:CBH24555.1}; EC=3.6.1.11 {ECO:0000313|EMBL:CBH24555.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Sa
Exopolyphosphatase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H950_SALRM
ppx; Exopolyphosphatase
sw_11_scaffold_47_16
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

17177..17686
DNA (510bp) protein (170aa)
NADH dehydrogenase I, J subunit {ECO:0000313|EMBL:CBH24556.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CBH24556.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodoth
NADH dehydrogenase i, j subunit n=2 Tax=Salinibacter ruber RepID=Q2S2L4_SALRD
nuoJ; NADH dehydrogenase I subunit J
sw_11_scaffold_47_17
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

17832..18137
DNA (306bp) protein (102aa)
nuoK; NADH dehydrogenase I subunit K; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3] id=24659394 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit
nuoK; NADH dehydrogenase I subunit K
sw_11_scaffold_47_18
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

18202..20199
DNA (1998bp) protein (666aa)
nuoL; NADH dehydrogenase I subunit L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] id=24659395 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
NADH dehydrogenase I, L subunit {ECO:0000313|EMBL:ABC46047.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibac
nuoL; NADH dehydrogenase I subunit L
sw_11_scaffold_47_19
unknown

Not on your lists

comp(21524..21733)
DNA (210bp) protein (70aa)

This feature has no annotations

sw_11_scaffold_47_20
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

22109..22237
DNA (129bp) protein (43aa)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetra
Putative pterin-4-alpha-carbinolamine dehydratase n=2 Tax=Salinibacter ruber RepID=Q2S2L0_SALRD
pterin-4-alpha-carbinolamine dehydratase
sw_11_scaffold_47_21
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

22318..23772
DNA (1455bp) protein (485aa)
nuoN; proton-translocating NADH-quinone oxidoreductase subunit N; K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] id=24659398 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit
nuoN; proton-translocating NADH-quinone oxidoreductase subunit N
Displaying 21 items

View Taxonomy