ggKbase home page

sw_11_scaffold_2413

Search features with annotation key words

Displaying 12 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_11_scaffold_2413_1
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1..771
DNA (771bp) protein (257aa)
Probable translation initiation factor IF-2 n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PM29_9EURY
translation initiation factor IF-2
Probable translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Ha
sw_11_scaffold_2413_2
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1039..2202)
DNA (1164bp) protein (388aa)
Acyl-CoA dehydrogenase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CNY5_9EURY
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ELZ24975.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-9
acyl-CoA dehydrogenase
sw_11_scaffold_2413_3
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2486..2680
DNA (195bp) protein (65aa)
cold shock protein id=24646106 bin=halophilic_archaeon_J07HX64 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=halophilic_archaeon_J07HX64
Cold-shock DNA-binding protein family {ECO:0000313|EMBL:ERH10285.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
cold shock protein
sw_11_scaffold_2413_4
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2747..3334)
DNA (588bp) protein (196aa)
imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19) id=24647936 bin=uncultivated_archaeon_J07ABHX6 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultivated_archaeon_J07ABHX6
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076};; TaxID=1085028 species="Archaea
imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
sw_11_scaffold_2413_5
unknown

Not on your lists

3444..3548
DNA (105bp) protein (35aa)

This feature has no annotations

sw_11_scaffold_2413_6

Not on your lists

comp(4573..5382)
DNA (810bp) protein (270aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured archaeon A07HR60 RepID=V4YBL6_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:ESS10351.1}; Flags: Fragment;; TaxID=1412874 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR60.;"
GLUG domain protein
sw_11_scaffold_2413_7
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5655..6623
DNA (969bp) protein (323aa)
hypothetical protein id=24648334 bin=uncultivated_archaeon_J07ABHX6 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultivated_archaeon_J07ABHX6
Methyltransferase domain protein {ECO:0000313|EMBL:ERH09466.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
hypothetical protein
sw_11_scaffold_2413_8
Haloarcula vallismortis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6667..7641
DNA (975bp) protein (325aa)
S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase {ECO:0000256|HAMAP-Rule:MF_01921}; EC=4.1.3.44 {ECO:0000256|HAMAP-Rule:MF_01921};; tRNA wyosine derivatives biosynthesis protein Taw1
tRNA-modifying enzyme n=1 Tax=Haloarcula vallismortis ATCC 29715 RepID=M0IY08_HALVA
tRNA-modifying protein
sw_11_scaffold_2413_9
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(7762..8085)
DNA (324bp) protein (108aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1085028 species="Archaea; Euryarchaeota; Halo
dinB; DNA polymerase IV (EC:2.7.7.7) id=24648487 bin=uncultivated_archaeon_J07ABHX6 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultivated_archaeon_J07ABHX6
nucleotidyltransferase/DNA polymerase involved in DNA repair
sw_11_scaffold_2413_10
unknown

Not on your lists

8288..8878
DNA (591bp) protein (197aa)

This feature has no annotations

sw_11_scaffold_2413_11
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

8942..9760
DNA (819bp) protein (273aa)
beta-lactamase id=24649679 bin=uncultivated_archaeon_J07ABHX6 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultivated_archaeon_J07ABHX6
Zn-dependent hydrolase {ECO:0000313|EMBL:ERH10766.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
beta-lactamase
sw_11_scaffold_2413_12
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9899..10552
DNA (654bp) protein (218aa)
OB-fold tRNA/helicase-type nucleic acid binding-protein; K07466 replication factor A1 id=24649681 bin=uncultivated_archaeon_J07ABHX6 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultivated_archaeon_J07ABHX6
OB-fold nucleic acid binding domain protein {ECO:0000313|EMBL:ERH10768.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
replication factor A
Displaying 12 items

View Taxonomy