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sw_12_scaffold_1000

Search features with annotation key words

Displaying 11 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_1000_1
Halorubrum saccharovorum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(103..399)
DNA (297bp) protein (99aa)
Haloacid dehalogenase {ECO:0000313|EMBL:KDS90720.1}; TaxID=2248 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum saccharovorum.;"
haloacid dehalogenase, type II
sw_12_scaffold_1000_2
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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771..2030
DNA (1260bp) protein (420aa)
Translation initiation factor 2 subunit gamma n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=IF2G_NATPD
tif2g; translation initiation factor IF-2 subunit gamma
Translation initiation factor 2 subunit gamma {ECO:0000255|HAMAP-Rule:MF_00119}; aIF2-gamma {ECO:0000255|HAMAP-Rule:MF_00119}; eIF-2-gamma {ECO:0000255|HAMAP-Rule:MF_00119}; TaxID=348780 species="Arch
sw_12_scaffold_1000_3
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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2027..2401
DNA (375bp) protein (125aa)
DUF188 family protein n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IMM6_NATPD
rpo operon protein
DUF188 family protein {ECO:0000313|EMBL:CAI50632.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas pharaonis (stra
sw_12_scaffold_1000_4
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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2403..2972
DNA (570bp) protein (190aa)
rpoE1; DNA-directed RNA polymerase subunit E' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit E {ECO:0000313|EMBL:CAI50631.1}; EC=2.7.7.6 {ECO:0000313|EMBL:CAI50631.1};; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteri
DNA-directed RNA polymerase subunit E n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IMM7_NATPD
sw_12_scaffold_1000_5
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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2973..3170
DNA (198bp) protein (66aa)
rpoE2; DNA-directed RNA polymerase subunit E'' (EC:2.7.7.6)
Transcription elongation factor Spt4 n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IMM8_NATPD
Transcription elongation factor Spt4 {ECO:0000256|HAMAP-Rule:MF_00949}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomo
sw_12_scaffold_1000_6
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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3172..3711
DNA (540bp) protein (180aa)
UPF0218 protein C443_12281 n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KLJ4_HALAR
UPF0218 protein C443_12281 {ECO:0000256|HAMAP-Rule:MF_00590}; TaxID=1230451 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula argentine
hypothetical protein
sw_12_scaffold_1000_7
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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3820..4221
DNA (402bp) protein (134aa)
30S ribosomal protein S24e n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CY38_9EURY
30S ribosomal protein S24e {ECO:0000256|HAMAP-Rule:MF_00545, ECO:0000256|RuleBase:RU004382}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.
rps24e; 30S ribosomal protein S24e
sw_12_scaffold_1000_8
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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4221..4355
DNA (135bp) protein (45aa)
30S ribosomal protein S27ae n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XP49_NATM8
rps31e; 30S ribosomal protein S31e
30S ribosomal protein S27ae {ECO:0000256|HAMAP-Rule:MF_00777}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas moola
sw_12_scaffold_1000_9
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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4359..5972
DNA (1614bp) protein (538aa)
O-sialoglycoprotein endopeptidase/protein kinase (EC:2.7.1.- 3.4.24.57)
Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=KAE1B_NATPD
Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein {ECO:0000255|HAMAP-Rule:MF_01447}; Includes:; tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000255|HAMAP-Rule:MF_01447
sw_12_scaffold_1000_10
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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6153..6431
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IMP4_NATPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAI50614.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas pharaonis (st
sw_12_scaffold_1000_11
Haloterrigena turkmenica, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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6508..7419
DNA (912bp) protein (304aa)
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=543526 species="Archaea; Eur
Histidine--tRNA ligase n=1 Tax=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) RepID=D2RQH4_HALTV
Displaying 11 items

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