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sw_12_scaffold_219

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_219_1
Haloferax mediterranei, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(2..697)
DNA (696bp) protein (232aa)
alpha-glucosidase n=1 Tax=Marinococcus halotolerans RepID=UPI0003B4E96E
amy7; alpha-glucosidase
Alpha-glucosidase {ECO:0000313|EMBL:AFK21248.1}; TaxID=523841 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax mediterranei (strain ATCC 335
sw_12_scaffold_219_2
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(872..2464)
DNA (1593bp) protein (531aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000378FC8E
RagB/SusD domain-containing protein
RagB/SusD domain protein {ECO:0000313|EMBL:ACT92826.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fe
sw_12_scaffold_219_3
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(2552..6220)
DNA (3669bp) protein (1223aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036B1405
Putative outer membrane protein {ECO:0000313|EMBL:EDM38070.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacte
TonB-dependent receptor
sw_12_scaffold_219_4
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(6316..7386)
DNA (1071bp) protein (357aa)
Anti-FecI sigma factor, FecR n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MHL0_RHOM4
anti-FecI sigma factor FecR
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:ACY47968.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus
sw_12_scaffold_219_5
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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7682..8269
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Gracilimonas tropica RepID=UPI0003718161
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACY47967.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" s
sw_12_scaffold_219_6

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8548..8934
DNA (387bp) protein (129aa)
Transposase n=1 Tax=uncultured archaeon GZfos11A10 RepID=Q64EL3_9ARCH
Transposase {ECO:0000313|EMBL:AAU82164.1}; TaxID=285399 species="Archaea; environmental samples.;" source="uncultured archaeon GZfos11A10.;"
sw_12_scaffold_219_7
Rubinisphaera brasiliensis, Rubinisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(8960..9229)
DNA (270bp) protein (90aa)
Sulfatase n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SN14_PLABD
sulfatase
Sulfatase {ECO:0000313|EMBL:ADY61043.1}; Flags: Precursor;; TaxID=756272 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rubinisphaera.;" source="Rubinisphaera
sw_12_scaffold_219_8
uncultured Rhizobium sp. HF0500_35F13, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9318..9581)
DNA (264bp) protein (88aa)
Arylsulfatase A and related enzymes (Fragment) n=1 Tax=uncultured Rhizobium sp. HF0500_35F13 RepID=E7C626_9RHIZ
Arylsulfatase A and related enzymes {ECO:0000313|EMBL:ADI22900.1}; Flags: Fragment;; TaxID=723627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacte
sulfatase
sw_12_scaffold_219_9
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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9969..12914
DNA (2946bp) protein (982aa)
hypothetical protein n=1 Tax=Rudanella lutea RepID=UPI00037E6A36
Membrane-bound dehydrogenase domain protein {ECO:0000313|EMBL:CCH56659.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi
membrane-bound dehydrogenase domain-containing protein
sw_12_scaffold_219_10
unknown

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comp(12837..13148)
DNA (312bp) protein (104aa)

This feature has no annotations

sw_12_scaffold_219_trna_1
unknown

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comp(13226..13299)
DNA (74bp)
transferRNA
sw_12_scaffold_219_11
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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13502..14485
DNA (984bp) protein (328aa)
hypothetical protein id=24659677 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
hypothetical protein
Membrane protein, putative {ECO:0000313|EMBL:ABC46070.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter r
sw_12_scaffold_219_12
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

14533..14904
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H9Y7_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH24842.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_12_scaffold_219_13
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

14958..15776
DNA (819bp) protein (273aa)
Phosphatidate cytidylyltransferase {ECO:0000313|EMBL:ABC46108.1}; EC=2.7.7.41 {ECO:0000313|EMBL:ABC46108.1};; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rho
Phosphatidate cytidylyltransferase n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S1U8_SALRD
cdsA; phosphatidate cytidylyltransferase
sw_12_scaffold_219_14
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

15998..16204
DNA (207bp) protein (69aa)
hypothetical protein
hypothetical protein id=24659674 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:ABC45955.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_12_scaffold_219_15
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

16583..18535
DNA (1953bp) protein (651aa)
mutL; DNA mismatch repair protein mutL; K03572 DNA mismatch repair protein MutL id=24659673 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermacea
mutL; DNA mismatch repair protein mutL
sw_12_scaffold_219_16
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(18611..19450)
DNA (840bp) protein (280aa)
Cytochrome c, class I n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MF52_RHOM4
cytochrome c, class I
Cytochrome c, class I {ECO:0000313|EMBL:ACY49308.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinu
sw_12_scaffold_219_17
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

19570..20991
DNA (1422bp) protein (474aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043112};; tRNA(Ile)-2-lysyl-cytidine
tRNA(Ile)-lysidine synthase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H9Y4_SALRM
mesJ; cell cycle protein MesJ
sw_12_scaffold_219_18
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

21053..21496
DNA (444bp) protein (148aa)
hpt; hypoxanthine phosphoribosyltransferase; K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] id=24659671 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:ABC44161.1}; EC=2.4.2.8 {ECO:0000313|EMBL:ABC44161.1};; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis;
hpt; hypoxanthine phosphoribosyltransferase
Displaying 19 items

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