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sw_12_scaffold_2289

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_2289_1
Halobiforma nitratireducens, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(3..494)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Halobiforma nitratireducens JCM 10879 RepID=M0LTN9_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA36816.1}; TaxID=1227454 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma nitratireducens JCM
Patched family protein
sw_12_scaffold_2289_2
Halorubrum saccharovorum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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705..2591
DNA (1887bp) protein (629aa)
Glucose/sorbosone dehydrogenase n=1 Tax=Halorubrum saccharovorum DSM 1137 RepID=M0DXX2_9EURY
Glucose/sorbosone dehydrogenase {ECO:0000313|EMBL:ELZ38939.1}; TaxID=1227484 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum saccharovoru
glucose/sorbosone dehydrogenase
sw_12_scaffold_2289_3
Halorubrum saccharovorum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(2881..3918)
DNA (1038bp) protein (346aa)
Xylose isomerase n=1 Tax=Halorubrum saccharovorum DSM 1137 RepID=M0DLK5_9EURY
Xylose isomerase {ECO:0000313|EMBL:ELZ36370.1}; TaxID=1227484 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum saccharovorum DSM 1137.;"
xylose isomerase
sw_12_scaffold_2289_4
Haloferax mediterranei, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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4203..5078
DNA (876bp) protein (292aa)
Protein-export membrane protein SecF n=1 Tax=Haloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4) RepID=I3R6A0_HALMT
secF; preprotein translocase subunit SecF
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=523841 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax medite
sw_12_scaffold_2289_5
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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5134..6297
DNA (1164bp) protein (388aa)
Protein-export membrane protein SecD n=1 Tax=Halogranum salarium B-1 RepID=J2ZYT6_9EURY
Protein-export membrane protein SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
secD; protein-export membrane protein SecD
sw_12_scaffold_2289_6
Haloarcula vallismortis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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6291..6542
DNA (252bp) protein (84aa)
Protein-export membrane protein SecD n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D2K7_9EURY
secD; preprotein translocase subunit SecD
Protein-export membrane protein SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=662477 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula
sw_12_scaffold_2289_7
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(6549..6773)
DNA (225bp) protein (75aa)
Ribonuclease {ECO:0000256|RuleBase:RU003515}; EC=3.1.26.- {ECO:0000256|RuleBase:RU003515};; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease n=1 Tax=halophilic archaeon J07HX64 RepID=U1P2B3_9EURY
sw_12_scaffold_2289_8
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(6770..7066)
DNA (297bp) protein (99aa)
rnhB; ribonuclease H, type 2 (EC:3.1.26.4)
Ribonuclease {ECO:0000256|RuleBase:RU003515}; EC=3.1.26.- {ECO:0000256|RuleBase:RU003515};; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.
Ribonuclease n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XLC1_NATM8
sw_12_scaffold_2289_9
unknown

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comp(7128..7244)
DNA (117bp) protein (39aa)

This feature has no annotations

sw_12_scaffold_2289_10
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(7330..8637)
DNA (1308bp) protein (436aa)
tRNA pseudouridine synthase Pus10 {ECO:0000256|HAMAP-Rule:MF_01893}; EC=5.4.99.- {ECO:0000256|HAMAP-Rule:MF_01893};; tRNA pseudouridine 54/55 synthase {ECO:0000256|HAMAP-Rule:MF_01893}; TaxID=1132509
tRNA pseudouridine synthase Pus10 n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M5K0_9EURY
tRNA pseudouridine 55 synthase archaea
sw_12_scaffold_2289_11
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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8736..9326
DNA (591bp) protein (197aa)
tRNA (pseudouridine(54)-N(1))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00587}; EC=2.1.1.257 {ECO:0000256|HAMAP-Rule:MF_00587};; TaxID=751944 species="Archaea; Euryarchaeota; Halobacteria; Halobact
tRNA (pseudouridine(54)-N(1))-methyltransferase n=1 Tax=Halobacterium sp. DL1 RepID=G4IEU3_9EURY
hypothetical protein
sw_12_scaffold_2289_12
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(9357..9554)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Halogranum salarium B-1 RepID=J3A461_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EJN60193.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
hypothetical protein
sw_12_scaffold_2289_13
unknown

Not on your lists

comp(9638..10483)
DNA (846bp) protein (282aa)

This feature has no annotations

sw_12_scaffold_2289_trna_1
unknown

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10799..10871
DNA (73bp)
transferRNA
sw_12_scaffold_2289_14
unknown

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11502..11993
DNA (492bp) protein (164aa)

This feature has no annotations

sw_12_scaffold_2289_15
Natrinema altunense, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(12065..12331)
DNA (267bp) protein (89aa)
PhiH1 repressor-like protein n=1 Tax=Natrinema altunense JCM 12890 RepID=L9ZIN2_9EURY
PhiH1 repressor-like protein {ECO:0000313|EMBL:ELY84988.1}; TaxID=1227494 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema altunense JCM 12890
phrH; PhiH1 repressor-like protein
sw_12_scaffold_2289_16
Natronorubrum bangense, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

12416..13153
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Natronorubrum bangense JCM 10635 RepID=L9WI04_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELY47983.1}; TaxID=1227500 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natronorubrum bangense JCM 106
sw_12_scaffold_2289_17
unknown

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comp(13214..13393)
DNA (180bp) protein (60aa)

This feature has no annotations

sw_12_scaffold_2289_18
Halorhabdus utahensis, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(13390..14187)
DNA (798bp) protein (266aa)
Integrase family protein n=1 Tax=Halorhabdus utahensis (strain DSM 12940 / JCM 11049 / AX-2) RepID=C7NP08_HALUD
integrase family protein
Integrase family protein {ECO:0000313|EMBL:ACV10299.1}; TaxID=519442 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus utahensis (str
Displaying 19 items

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