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sw_12_scaffold_355

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_355_trna_2
unknown

Not on your lists

comp(1733..1813)
DNA (81bp)
transferRNA
sw_12_scaffold_355_1
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2107..2973
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0DGQ1_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ33902.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum pallidum J
hypothetical protein
sw_12_scaffold_355_2
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3025..5034
DNA (2010bp) protein (670aa)
DNA-binding protein MutS2 n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3ITZ9_NATPD
mutS_3; DNA mismatch repair protein MutS-like protein
DNA-binding protein MutS2 {ECO:0000256|HAMAP-Rule:MF_00971}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas pharaon
sw_12_scaffold_355_3
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5387..6505
DNA (1119bp) protein (373aa)
ORC1-type DNA replication protein n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XLP0_NATM8
orc2; Orc1-type DNA replication protein
ORC1-type DNA replication protein {ECO:0000256|HAMAP-Rule:MF_01407}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas
sw_12_scaffold_355_4
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6533..8755)
DNA (2223bp) protein (741aa)
rad3b; DNA repair helicase Rad3 (EC:3.6.4.12)
DNA repair helicase Rad3 {ECO:0000313|EMBL:CCQ37987.1}; EC=3.6.4.12 {ECO:0000313|EMBL:CCQ37987.1};; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natro
DNA repair helicase Rad3 n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XTW6_NATM8
sw_12_scaffold_355_5
Haloquadratum sp. J07HQX50, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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9283..10812
DNA (1530bp) protein (510aa)
hypothetical protein id=24627217 bin=Haloquadratum_J07HQX50 species=Haloquadratum sp. J07HQX50 genus=Haloquadratum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Haloquadratum_J07HQX50
NPCBM-associated, NEW3 domain of alpha-galactosidase {ECO:0000313|EMBL:ERG98844.1}; TaxID=1238426 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.;" source=
hypothetical protein
sw_12_scaffold_355_6
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10809..11537
DNA (729bp) protein (243aa)
Antimicrobial peptide ABC transporter ATPase n=1 Tax=Halogranum salarium B-1 RepID=J3EY68_9EURY
Antimicrobial peptide ABC transporter ATPase {ECO:0000313|EMBL:EJN60207.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-
antimicrobial peptide ABC transporter ATPase
sw_12_scaffold_355_7
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11555..12658
DNA (1104bp) protein (368aa)
salY2; antimicrobial peptides ABC transporter permease; K02004 putative ABC transport system permease protein id=24616681 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
Antimicrobial peptides ABC transporter permease {ECO:0000313|EMBL:ESP87268.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" s
hypothetical protein
sw_12_scaffold_355_8
unknown

Not on your lists

comp(12655..13176)
DNA (522bp) protein (174aa)

This feature has no annotations

sw_12_scaffold_355_9
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

13177..13734
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MJI6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA45503.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
hypothetical protein
sw_12_scaffold_355_10
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(13706..14158)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3ITK4_NATPD
hypothetical protein
FMN-binding domain protein {ECO:0000313|EMBL:CAI48529.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas pharaonis
sw_12_scaffold_355_11
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14441..15454)
DNA (1014bp) protein (338aa)
Integrase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CJ46_9EURY
Integrase {ECO:0000313|EMBL:ELZ22387.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-9-1.;"
integrase
sw_12_scaffold_355_12
Natrialba phage PhiCh1, Caudovirales, Viruses

Not on your lists

comp(15451..16329)
DNA (879bp) protein (293aa)
DNA polymerase sliding clamp n=2 Tax=root RepID=D3T2B0_NATMM
Proliferating cell nuclear antigen, PCNA
Putative proliferation cellular nuclear antigene {ECO:0000313|EMBL:AAM88733.1}; TaxID=114777 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae.;" source="Natrialba phage PhiCh1.;
sw_12_scaffold_355_13
unknown

Not on your lists

comp(16322..16489)
DNA (168bp) protein (56aa)

This feature has no annotations

sw_12_scaffold_355_14
Haloarcula vallismortis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16489..16686)
DNA (198bp) protein (66aa)
ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Haloarcula vallismortis ATCC 29715 RepID=M0JTB6_HALVA
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:EMA10925.1}; TaxID=662477 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloar
RNA polymerase subunit sigma-24
sw_12_scaffold_355_15
unknown

Not on your lists

comp(16683..16895)
DNA (213bp) protein (71aa)

This feature has no annotations

sw_12_scaffold_355_16
Haloferax elongans, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16892..17254)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Haloferax elongans ATCC BAA-1513 RepID=M0HMV3_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ84434.1}; TaxID=1230453 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax elongans ATCC BAA-1513
sw_12_scaffold_355_17
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(17251..17610)
DNA (360bp) protein (120aa)
PadR family transcription regulator n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IRG9_NATPD
transcription regulator
PadR family transcription regulator {ECO:0000313|EMBL:CAI49274.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas p
sw_12_scaffold_355_18
Haloarcula sinaiiensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

17734..18162
DNA (429bp) protein (143aa)
PhiH1 repressor-like protein n=1 Tax=Haloarcula sinaiiensis ATCC 33800 RepID=M0JYA5_9EURY
PhiH1 repressor-like protein {ECO:0000313|EMBL:EMA12949.1}; TaxID=662476 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula sinaiiensis
PhiH1 repressor-like protein
sw_12_scaffold_355_19
Natrialba aegyptia, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

18159..18464
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Natrialba aegyptia DSM 13077 RepID=M0B926_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ07325.1}; TaxID=1227491 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source="Natrialba aegyptia DSM 13077.;"
hypothetical protein
sw_12_scaffold_355_20
unknown

Not on your lists

18530..19108
DNA (579bp) protein (193aa)

This feature has no annotations

sw_12_scaffold_355_21
Haloferax mediterranei, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19094..19729)
DNA (636bp) protein (212aa)
Putative phage integrase n=1 Tax=Haloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4) RepID=I3RAI4_HALMT
phage integrase
Integrase {ECO:0000313|EMBL:AHZ24655.1}; Putative phage integrase {ECO:0000313|EMBL:AFK21244.1}; TaxID=523841 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;"
sw_12_scaffold_355_22
unknown

Not on your lists

comp(19903..20070)
DNA (168bp) protein (56aa)

This feature has no annotations

sw_12_scaffold_355_23
Haloferax sp. ATCC BAA-645, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

20209..20610
DNA (402bp) protein (134aa)
Uncharacterized protein n=3 Tax=Haloferax RepID=M0FET3_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ62638.1}; TaxID=1227463 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax sp. ATCC BAA-645.;"
hypothetical protein
sw_12_scaffold_355_24
Haloferax sp. ATCC BAA-645, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

20610..23966
DNA (3357bp) protein (1119aa)
Uncharacterized protein n=3 Tax=Haloferax RepID=M0FD20_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ62635.1}; TaxID=1227463 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax sp. ATCC BAA-645.;"
hypothetical protein
sw_12_scaffold_355_25
Haloferax volcanii, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

23993..24622
DNA (630bp) protein (210aa)
Homolog to HGPV1-ORF5 n=1 Tax=Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) RepID=D4GZQ2_HALVD
hypothetical protein
Homolog to HGPV1-ORF5 {ECO:0000313|EMBL:ADE04739.1}; Uncharacterized protein {ECO:0000313|EMBL:ELY23308.1}; TaxID=309800 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; H
sw_12_scaffold_355_26
Halorubrum sp. T3, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

24690..25394
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Halorubrum terrestre JCM 10247 RepID=M0DKG2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:AGI12354.1}; TaxID=1194088 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum sp. T3.;"
hypothetical protein
sw_12_scaffold_355_27

Not on your lists

25391..26542
DNA (1152bp) protein (384aa)
ORF7 n=1 Tax=Halogeometricum pleomorphic virus 1 RepID=H9ABQ8_9VIRU
ORF7 {ECO:0000313|EMBL:AFD04028.1}; TaxID=1156722 species="Viruses; ssDNA viruses; unclassified ssDNA viruses.;" source="Halogeometricum pleomorphic virus 1.;"
hypothetical protein
sw_12_scaffold_355_28
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

27107..27346
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MHR9_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA44254.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
hypothetical protein
sw_12_scaffold_355_29
Halorubrum coriense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

27343..27747
DNA (405bp) protein (135aa)
PilT protein domain-containing protein n=1 Tax=Halorubrum coriense DSM 10284 RepID=M0EVP1_9EURY
PilT protein domain-containing protein {ECO:0000313|EMBL:ELZ50484.1}; TaxID=1227466 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum corie
Displaying items 1-30 of 41 in total

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