ggKbase | organisms

SW_12_Actinobacteria_70_9

In projects: SW_12

Consensus taxonomy: Actinobacteria → Actinobacteria → Bacteria

Taxonomy override: Actinobacteria

Metagenomic Context

Parent: SW_12_UNK

Properties

Avg. coverage: 8.54 Longest contig: 3.76 Kbp Bin length: 108.43 Kbp GC content: 70.08 %

Contigs count: 78 Features count: 153 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 10 / 55 BSCG 12 / 51 MC: 1 ASCG 2 / 38

Displaying items 1-50 of 78 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_12_scaffold_9909 Class: Actinobacteria (50%)	4	1736 bp	69.70	8.70	98.33
sw_12_scaffold_27910 Class: Actinobacteria (66.67%)	3	1243 bp	72.81	10.22	85.68
sw_12_scaffold_33503 Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (66.67%)	3	1181 bp	66.30	7.45	79.25
sw_12_scaffold_7100 Class: Actinobacteria (66.67%)	3	2202 bp	71.66	7.67	89.10
sw_12_scaffold_19148 Order: Pseudonocardiales (66.67%)	3	1040 bp	71.25	6.73	83.37
sw_12_scaffold_16617 Species: Pseudonocardia dioxanivorans (66.67%)	3	1163 bp	69.30	6.96	94.41
sw_12_scaffold_14316 Domain: Bacteria (100%)	3	1306 bp	68.45	7.89	86.83
sw_12_scaffold_7895 Phylum: Actinobacteria (66.67%)	3	2043 bp	70.83	7.98	96.48
sw_12_scaffold_16238 Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (66.67%)	3	1737 bp	72.08	9.79	100.69
sw_12_scaffold_13706 Class: Actinobacteria (66.67%)	3	2256 bp	65.47	6.83	96.14
sw_12_scaffold_11425 Class: Actinobacteria (66.67%)	3	1559 bp	73.57	9.24	99.68
sw_12_scaffold_22188 Phylum: Actinobacteria (100%)	3	1621 bp	65.27	8.82	81.62
sw_12_scaffold_14926 Species: RBG_16_Actinobacteria_67_10_curated (50%)	2	1266 bp	72.83	10.19	96.21
sw_12_scaffold_36558 Species: BJP_IG2102_Coriobacteriales_64_17 (50%)	2	1037 bp	64.61	8.39	99.52
sw_12_scaffold_26545 Species: Stackebrandtia nassauensis (50%)	2	1043 bp	71.62	8.53	100.67
sw_12_scaffold_17475 Species: Saccharomonospora marina (50%)	2	1688 bp	71.39	8.35	89.57
sw_12_scaffold_32009 Species: Collinsella sp. CAG:398 (50%)	2	1321 bp	67.60	8.63	62.45
sw_12_scaffold_19570 Species: Streptomyces albulus (50%)	2	1021 bp	70.03	8.42	84.04
sw_12_scaffold_13355 Species: Streptomyces sp. NRRL S-104 (50%)	2	1379 bp	69.76	8.12	92.02
sw_12_scaffold_18428 Species: Mycobacterium arupense (50%)	2	1074 bp	72.16	9.78	79.05
sw_12_scaffold_14057 Species: Acidimicrobium ferrooxidans (50%)	2	1325 bp	71.92	8.23	99.40
sw_12_scaffold_12680 Species: Mycobacterium hassiacum (50%)	2	1436 bp	71.45	6.55	86.70
sw_12_scaffold_13373 Species: Thermomonospora curvata (50%)	2	1378 bp	69.67	6.68	99.93
sw_12_scaffold_19596 Species: Kutzneria sp. 744 (50%)	2	1020 bp	72.84	9.80	91.76
sw_12_scaffold_6656 Species: Actinokineospora spheciospongiae (50%)	2	2295 bp	67.67	9.67	96.73
sw_12_scaffold_15688 Species: Saccharothrix espanaensis (50%)	2	2195 bp	71.62	8.97	98.41
sw_12_scaffold_30829 Species: Micromonospora carbonacea (50%)	2	1689 bp	74.54	9.53	75.49
sw_12_scaffold_11540 Species: Actinoplanes missouriensis (50%)	2	1548 bp	70.41	8.01	87.79
sw_12_scaffold_15693 Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)	2	1218 bp	69.95	8.54	77.59
sw_12_scaffold_18227 Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)	2	1083 bp	70.91	7.94	83.93
sw_12_scaffold_17542 Species: Acidothermus cellulolyticus (50%)	2	1687 bp	67.28	7.88	100.83
sw_12_scaffold_23631 Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)	2	1653 bp	68.72	7.50	96.19
sw_12_scaffold_17314 Species: Frankia symbiont of Datisca glomerata (50%)	2	1126 bp	73.45	9.77	99.38
sw_12_scaffold_29501 Species: Cryobacterium sp. MLB-32 (50%)	2	1268 bp	72.40	7.89	102.92
sw_12_scaffold_11099 Species: Nakamurella multipartita (50%)	2	1594 bp	69.32	7.21	96.55
sw_12_scaffold_6225 Species: RBG_16_Actinobacteria_67_15_curated (50%)	2	2398 bp	68.97	9.67	98.33
sw_12_scaffold_32414 Species: Streptomyces xiamenensis (50%)	2	1246 bp	72.23	9.15	104.25
sw_12_scaffold_18727 Species: Thermomonospora curvata (50%)	2	1058 bp	70.32	7.56	78.83
sw_12_scaffold_31137 Species: Nocardiopsis dassonvillei (50%)	2	1365 bp	64.69	7.69	84.84
sw_12_scaffold_17354 Species: Streptomyces pristinaespiralis (50%)	2	1124 bp	71.26	8.19	96.35
sw_12_scaffold_16666 Species: Verrucosispora maris (50%)	2	1160 bp	70.86	9.05	96.47
sw_12_scaffold_15979 Species: Streptomyces scabiei (50%)	2	1200 bp	64.00	8.00	94.75
sw_12_scaffold_19436 Species: Candidatus Microthrix parvicella (50%)	2	1027 bp	70.69	6.72	80.33
sw_12_scaffold_12300 Species: Amycolatopsis vancoresmycina (50%)	2	1472 bp	71.94	10.39	91.71
sw_12_scaffold_17382 Species: Micromonospora lupini (50%)	2	1123 bp	65.54	8.64	100.98
sw_12_scaffold_19924 Species: Streptomyces glaucescens (50%)	2	1007 bp	72.00	8.24	93.25
sw_12_scaffold_18775 Species: Blastococcus saxobsidens (50%)	2	1645 bp	71.31	8.09	82.25
sw_12_scaffold_17626 Species: Saccharomonospora viridis (50%)	2	1111 bp	71.65	9.18	78.04
sw_12_scaffold_20292 Species: Thermomonospora curvata (50%)	2	1448 bp	71.27	8.91	73.14
sw_12_scaffold_32833 Species: Prauserella sp. Am3 (50%)	2	1300 bp	65.23	7.23	95.54

Displaying items 1-50 of 78 in total

SW_12_Actinobacteria_70_9

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_12_Actinobacteria_70_9

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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