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SW_12_Actinobacteria_70_9

In projects: SW_12

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Taxonomy override: Actinobacteria

Metagenomic Context

Parent: SW_12_UNK

Properties

Avg. coverage: 8.54 Longest contig: 3.76 Kbp Bin length: 108.43 Kbp GC content: 70.08 %
Contigs count: 78 Features count: 153 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 10 / 55 BSCG 12 / 51 MC: 1 ASCG 2 / 38
Displaying items 1-50 of 78 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
sw_12_scaffold_9909
Class: Actinobacteria (50%)
4 1736 bp 69.70 8.70 98.33
sw_12_scaffold_27910
Class: Actinobacteria (66.67%)
3 1243 bp 72.81 10.22 85.68
sw_12_scaffold_33503
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (66.67%)
3 1181 bp 66.30 7.45 79.25
sw_12_scaffold_7100
Class: Actinobacteria (66.67%)
3 2202 bp 71.66 7.67 89.10
sw_12_scaffold_19148
Order: Pseudonocardiales (66.67%)
3 1040 bp 71.25 6.73 83.37
sw_12_scaffold_16617
Species: Pseudonocardia dioxanivorans (66.67%)
3 1163 bp 69.30 6.96 94.41
sw_12_scaffold_14316
Domain: Bacteria (100%)
3 1306 bp 68.45 7.89 86.83
sw_12_scaffold_7895
Phylum: Actinobacteria (66.67%)
3 2043 bp 70.83 7.98 96.48
sw_12_scaffold_16238
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (66.67%)
3 1737 bp 72.08 9.79 100.69
sw_12_scaffold_13706
Class: Actinobacteria (66.67%)
3 2256 bp 65.47 6.83 96.14
sw_12_scaffold_11425
Class: Actinobacteria (66.67%)
3 1559 bp 73.57 9.24 99.68
sw_12_scaffold_22188
Phylum: Actinobacteria (100%)
3 1621 bp 65.27 8.82 81.62
sw_12_scaffold_14926
Species: RBG_16_Actinobacteria_67_10_curated (50%)
2 1266 bp 72.83 10.19 96.21
sw_12_scaffold_36558
Species: BJP_IG2102_Coriobacteriales_64_17 (50%)
2 1037 bp 64.61 8.39 99.52
sw_12_scaffold_26545
Species: Stackebrandtia nassauensis (50%)
2 1043 bp 71.62 8.53 100.67
sw_12_scaffold_17475
Species: Saccharomonospora marina (50%)
2 1688 bp 71.39 8.35 89.57
sw_12_scaffold_32009
Species: Collinsella sp. CAG:398 (50%)
2 1321 bp 67.60 8.63 62.45
sw_12_scaffold_19570
Species: Streptomyces albulus (50%)
2 1021 bp 70.03 8.42 84.04
sw_12_scaffold_13355
Species: Streptomyces sp. NRRL S-104 (50%)
2 1379 bp 69.76 8.12 92.02
sw_12_scaffold_18428
Species: Mycobacterium arupense (50%)
2 1074 bp 72.16 9.78 79.05
sw_12_scaffold_14057
Species: Acidimicrobium ferrooxidans (50%)
2 1325 bp 71.92 8.23 99.40
sw_12_scaffold_12680
Species: Mycobacterium hassiacum (50%)
2 1436 bp 71.45 6.55 86.70
sw_12_scaffold_13373
Species: Thermomonospora curvata (50%)
2 1378 bp 69.67 6.68 99.93
sw_12_scaffold_19596
Species: Kutzneria sp. 744 (50%)
2 1020 bp 72.84 9.80 91.76
sw_12_scaffold_6656
Species: Actinokineospora spheciospongiae (50%)
2 2295 bp 67.67 9.67 96.73
sw_12_scaffold_15688
Species: Saccharothrix espanaensis (50%)
2 2195 bp 71.62 8.97 98.41
sw_12_scaffold_30829
Species: Micromonospora carbonacea (50%)
2 1689 bp 74.54 9.53 75.49
sw_12_scaffold_11540
Species: Actinoplanes missouriensis (50%)
2 1548 bp 70.41 8.01 87.79
sw_12_scaffold_15693
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 1218 bp 69.95 8.54 77.59
sw_12_scaffold_18227
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 1083 bp 70.91 7.94 83.93
sw_12_scaffold_17542
Species: Acidothermus cellulolyticus (50%)
2 1687 bp 67.28 7.88 100.83
sw_12_scaffold_23631
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 1653 bp 68.72 7.50 96.19
sw_12_scaffold_17314
Species: Frankia symbiont of Datisca glomerata (50%)
2 1126 bp 73.45 9.77 99.38
sw_12_scaffold_29501
Species: Cryobacterium sp. MLB-32 (50%)
2 1268 bp 72.40 7.89 102.92
sw_12_scaffold_11099
Species: Nakamurella multipartita (50%)
2 1594 bp 69.32 7.21 96.55
sw_12_scaffold_6225
Species: RBG_16_Actinobacteria_67_15_curated (50%)
2 2398 bp 68.97 9.67 98.33
sw_12_scaffold_32414
Species: Streptomyces xiamenensis (50%)
2 1246 bp 72.23 9.15 104.25
sw_12_scaffold_18727
Species: Thermomonospora curvata (50%)
2 1058 bp 70.32 7.56 78.83
sw_12_scaffold_31137
Species: Nocardiopsis dassonvillei (50%)
2 1365 bp 64.69 7.69 84.84
sw_12_scaffold_17354
Species: Streptomyces pristinaespiralis (50%)
2 1124 bp 71.26 8.19 96.35
sw_12_scaffold_16666
Species: Verrucosispora maris (50%)
2 1160 bp 70.86 9.05 96.47
sw_12_scaffold_15979
Species: Streptomyces scabiei (50%)
2 1200 bp 64.00 8.00 94.75
sw_12_scaffold_19436
Species: Candidatus Microthrix parvicella (50%)
2 1027 bp 70.69 6.72 80.33
sw_12_scaffold_12300
Species: Amycolatopsis vancoresmycina (50%)
2 1472 bp 71.94 10.39 91.71
sw_12_scaffold_17382
Species: Micromonospora lupini (50%)
2 1123 bp 65.54 8.64 100.98
sw_12_scaffold_19924
Species: Streptomyces glaucescens (50%)
2 1007 bp 72.00 8.24 93.25
sw_12_scaffold_18775
Species: Blastococcus saxobsidens (50%)
2 1645 bp 71.31 8.09 82.25
sw_12_scaffold_17626
Species: Saccharomonospora viridis (50%)
2 1111 bp 71.65 9.18 78.04
sw_12_scaffold_20292
Species: Thermomonospora curvata (50%)
2 1448 bp 71.27 8.91 73.14
sw_12_scaffold_32833
Species: Prauserella sp. Am3 (50%)
2 1300 bp 65.23 7.23 95.54
Displaying items 1-50 of 78 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.