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sw_12_scaffold_134

Search features with annotation key words

Displaying items 1-30 of 38 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_134_1
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(3..221)
DNA (219bp) protein (73aa)
Transcription initiation factor IIB n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3ISF4_NATPD
tfbA_1; transcription initiation factor TFB 1
Transcription initiation factor IIB {ECO:0000256|HAMAP-Rule:MF_00383}; Short=TFIIB {ECO:0000256|HAMAP-Rule:MF_00383};; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halo
sw_12_scaffold_134_2
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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326..2053
DNA (1728bp) protein (576aa)
DNA mismatch repair protein MutS domain protein n=1 Tax=Halobacterium sp. DL1 RepID=G4IIF5_9EURY
DNA mismatch repair protein {ECO:0000313|EMBL:AHG03009.1}; TaxID=751944 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.;" source="Halobacterium sp. DL1
DNA mismatch repair protein MutS
sw_12_scaffold_134_3
unknown

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comp(2055..2297)
DNA (243bp) protein (81aa)

This feature has no annotations

sw_12_scaffold_134_4
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2359..2637)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NY84_HALMD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV48544.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrobium mukohataei
sw_12_scaffold_134_5

Not on your lists

comp(3088..3735)
DNA (648bp) protein (216aa)
Phosphatidylserine decarboxylase n=1 Tax=uncultured archaeon A07HN63 RepID=V4Y2Z4_9ARCH
Phosphatidylserine decarboxylase {ECO:0000313|EMBL:ESS09093.1}; TaxID=1412873 species="Archaea; environmental samples.;" source="uncultured archaeon A07HN63.;"
phosphatidylserine decarboxylase
sw_12_scaffold_134_6
Haloarcula sp. CBA1115, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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3760..4206
DNA (447bp) protein (149aa)
6-pyruvoyl tetrahydropterin synthase n=2 Tax=Haloarcula hispanica RepID=G0HQT2_HALHT
6-carboxy-5,6,7,8-tetrahydropterin synthase
6-carboxy-5,6,7,8-tetrahydropterin synthase {ECO:0000313|EMBL:AJF25268.1}; TaxID=1592728 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarc
sw_12_scaffold_134_7
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

4206..4964
DNA (759bp) protein (253aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Archaeosine biosynthesis pro
7-carboxy-7-deazaguanine synthase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CUS0_9EURY
organic radical activating enzyme
sw_12_scaffold_134_8
Natrinema pellirubrum, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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4961..5641
DNA (681bp) protein (227aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Archaeosine biosyn
7-cyano-7-deazaguanine synthase n=1 Tax=Natrinema pellirubrum (strain DSM 15624 / JCM 10476 / NCIMB 786) RepID=L0JQN0_NATP1
queuosine biosynthesis protein QueC
sw_12_scaffold_134_9
unknown

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comp(5642..5914)
DNA (273bp) protein (91aa)

This feature has no annotations

sw_12_scaffold_134_10
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6007..6738
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Halomicrobium katesii RepID=UPI00036C631D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV47647.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrobium mukohataei
sw_12_scaffold_134_11
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(6742..8010)
DNA (1269bp) protein (423aa)
ATP-grasp protein-like protein n=1 Tax=Halobiforma lacisalsi AJ5 RepID=M0L4A3_9EURY
ATP-grasp protein-like protein {ECO:0000313|EMBL:EMA27913.1}; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma lacisalsi AJ5.
ATP-grasp family protein
sw_12_scaffold_134_12
unknown

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8156..9157
DNA (1002bp) protein (334aa)

This feature has no annotations

sw_12_scaffold_134_13
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(9165..11558)
DNA (2394bp) protein (798aa)
top6B; DNA topoisomerase VI subunit B (EC:5.99.1.3)
Type 2 DNA topoisomerase 6 subunit B {ECO:0000255|HAMAP-Rule:MF_00322}; EC=5.99.1.3 {ECO:0000255|HAMAP-Rule:MF_00322};; Type II DNA topoisomerase VI subunit B {ECO:0000255|HAMAP-Rule:MF_00322}; Short=
Type 2 DNA topoisomerase 6 subunit B n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=TOP6B_NATPD
sw_12_scaffold_134_14

Not on your lists

12524..15736
DNA (3213bp) protein (1071aa)
DNA gyrase subunit B (EC:5.99.1.3) rbh
DNA gyrase subunit B {ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|RuleBase:RU003363};; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
DNA gyrase subunit B n=1 Tax=halophilic archaeon DL31 RepID=G2MH38_9ARCH
sw_12_scaffold_134_15
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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15733..17640
DNA (1908bp) protein (636aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; N
DNA gyrase subunit A n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IPV7_NATPD
gyrA; DNA gyrase subunit A
sw_12_scaffold_134_16
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

17637..18128
DNA (492bp) protein (164aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; N
DNA gyrase subunit A n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IPV7_NATPD
Suspect SCG annotation. See neighboring gene [sw_12_scaffold_134_15].
gyrA; DNA gyrase subunit A
sw_12_scaffold_134_17
unknown

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comp(18130..18414)
DNA (285bp) protein (95aa)

This feature has no annotations

sw_12_scaffold_134_18
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(18738..19637)
DNA (900bp) protein (300aa)
Arginase n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0KKJ4_9EURY
arginase
Arginase {ECO:0000313|EMBL:ELZ24535.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-9-1.;"
sw_12_scaffold_134_19
Halogeometricum borinquense, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19747..20658)
DNA (912bp) protein (304aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NUH9_HALBP
nucleoside-diphosphate-sugar epimerase
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:ADQ68699.1}; Flags: Precursor;; TaxID=469382 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" s
sw_12_scaffold_134_20
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

20754..21293
DNA (540bp) protein (180aa)
Transcriptional regulator n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CPK4_9EURY
Transcriptional regulator {ECO:0000313|EMBL:ELZ24538.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense
hypothetical protein
sw_12_scaffold_134_21
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

21345..22517
DNA (1173bp) protein (391aa)
ndh; probable NADH dehydrogenase (EC:1.6.99.3)
Probable NADH dehydrogenase {ECO:0000313|EMBL:CCQ36641.1}; EC=1.6.99.3 {ECO:0000313|EMBL:CCQ36641.1};; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Na
Probable NADH dehydrogenase n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XR20_NATM8
sw_12_scaffold_134_22
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(22835..23644)
DNA (810bp) protein (270aa)
udp1; uridine phosphorylase (EC:2.4.2.3); K00757 uridine phosphorylase [EC:2.4.2.3] id=24614829 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
Uridine phosphorylase {ECO:0000313|EMBL:ESP88729.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Candidatus Halobonu
purine or other phosphorylase family 1
sw_12_scaffold_134_23
unknown

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23719..24111
DNA (393bp) protein (131aa)

This feature has no annotations

sw_12_scaffold_134_24
Haloferax gibbonsii, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(24112..24504)
DNA (393bp) protein (131aa)
cdd; cytidine deaminase (EC:3.5.4.5)
Cytidine deaminase n=1 Tax=Haloferax gibbonsii ATCC 33959 RepID=M0H1W8_9EURY
Cytidine deaminase {ECO:0000313|EMBL:ELZ77767.1}; TaxID=1227459 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax gibbonsii ATCC 33959.;"
sw_12_scaffold_134_25
Haloarcula californiae, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(24542..25633)
DNA (1092bp) protein (364aa)
Ribose ABC transporter permease n=1 Tax=Haloarcula californiae ATCC 33799 RepID=M0K663_9EURY
Ribose ABC transporter permease {ECO:0000313|EMBL:EMA16872.1}; TaxID=662475 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula californi
rbsC; ribose ABC transporter permease
sw_12_scaffold_134_26
Halorubrum coriense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(25626..26948)
DNA (1323bp) protein (441aa)
Ribose/branched-chain amino acids ABC transporter permease n=1 Tax=Halorubrum coriense DSM 10284 RepID=M0EG74_9EURY
Ribose/branched-chain amino acids ABC transporter permease {ECO:0000313|EMBL:ELZ46765.1}; TaxID=1227466 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" sour
ribose ABC transporter permease
sw_12_scaffold_134_27
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(26945..28501)
DNA (1557bp) protein (519aa)
Putative sugar ABC transporter ATP-binding protein n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0CTU7_9EURY
Putative sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:ELZ26063.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source=
nucleoside ABC transporter ATP-binding protein
sw_12_scaffold_134_28
Halorubrum coriense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(28507..29490)
DNA (984bp) protein (328aa)
ABC-type transport system, substrate-binding protein n=1 Tax=Halorubrum coriense DSM 10284 RepID=M0EI58_9EURY
ABC-type transport system, substrate-binding protein {ECO:0000313|EMBL:ELZ46763.1}; TaxID=1227466 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Ha
yufN; ABC transporter
sw_12_scaffold_134_29
Haloferax elongans, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(29738..31099)
DNA (1362bp) protein (454aa)
Phosphohexomutase (Phosphoglucomutase,phosphomannomutase) n=1 Tax=Haloferax elongans ATCC BAA-1513 RepID=M0HSF0_9EURY
Phosphohexomutase (Phosphoglucomutase,phosphomannomutase) {ECO:0000313|EMBL:ELZ86029.1}; TaxID=1230453 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source
phosphomannomutase
sw_12_scaffold_134_30
Natrinema pallidum, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(31303..31752)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Natrinema pallidum DSM 3751 RepID=L9YVW2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELY78274.1}; TaxID=1227495 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema pallidum DSM 3751.;"
hypothetical protein
Displaying items 1-30 of 38 in total

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