ggKbase home page

sw_12_scaffold_6

Search features with annotation key words

Displaying items 1-30 of 215 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_6_1
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1..345)
DNA (345bp) protein (115aa)
Uncharacterized protein n=2 Tax=Haloquadratum walsbyi (strain DSM 16790 / HBSQ001) RepID=Q18IC4_HALWD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ52250.2}; TaxID=362976 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.;" source="Haloquadratum walsbyi (strain
sw_12_scaffold_6_2
unknown

Not on your lists

comp(451..1008)
DNA (558bp) protein (186aa)

This feature has no annotations

sw_12_scaffold_6_3
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1170..1634)
DNA (465bp) protein (155aa)
HNH endonuclease id=24634597 bin=Haloquadratum_walsbyi_J07HQW2 species=Haloquadratum walsbyi genus=Haloquadratum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Haloquadratum_walsbyi_J07HQW2
GcrA cell cycle regulator {ECO:0000313|EMBL:ERG97400.1}; TaxID=1238425 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.;" source="Haloquadratum walsbyi J07H
HNH endonuclease
sw_12_scaffold_6_4
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1825..3924
DNA (2100bp) protein (700aa)
KAP P-loop domain-containing protein n=1 Tax=Haloarcula japonica DSM 6131 RepID=M0LG35_HALJP
KAP P-loop domain-containing protein {ECO:0000313|EMBL:EMA30960.1}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula jap
KAP P-loop domain-containing protein
sw_12_scaffold_6_5
Haloarcula vallismortis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4103..4666)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Haloarcula vallismortis ATCC 29715 RepID=M0J6G5_HALVA
Uncharacterized protein {ECO:0000313|EMBL:EMA03564.1}; TaxID=662477 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula vallismortis ATCC
hypothetical protein
sw_12_scaffold_6_6
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4663..5109)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Haloarcula japonica DSM 6131 RepID=M0LFG1_HALJP
Uncharacterized protein {ECO:0000313|EMBL:EMA31164.1}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula japonica DSM 613
hypothetical protein
sw_12_scaffold_6_7
Haloarcula marismortui, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5206..6399)
DNA (1194bp) protein (398aa)
Uncharacterized protein n=2 Tax=Haloarcula RepID=Q5V721_HALMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAV44613.1}; TaxID=272569 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula marismortui (stra
sw_12_scaffold_6_8

Not on your lists

comp(6399..6941)
DNA (543bp) protein (181aa)
Uncharacterized protein required for cytochrome oxidase assembly n=1 Tax=uncultured archaeon A07HN63 RepID=V4Y5R1_9ARCH
Uncharacterized protein required for cytochrome oxidase assembly {ECO:0000313|EMBL:ESS10138.1}; TaxID=1412873 species="Archaea; environmental samples.;" source="uncultured archaeon A07HN63.;"
hypothetical protein
sw_12_scaffold_6_9
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6962..7891)
DNA (930bp) protein (310aa)
Uncharacterized protein n=2 Tax=Haloarcula RepID=Q5V747_HALMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EMA27566.1}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula japonica DSM 613
sw_12_scaffold_6_10
Haloarcula marismortui, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(8010..9314)
DNA (1305bp) protein (435aa)
Uncharacterized protein n=1 Tax=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) RepID=Q5V746_HALMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAV44638.1}; TaxID=272569 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula marismortui (stra
sw_12_scaffold_6_11
Halogeometricum borinquense, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(9567..10148)
DNA (582bp) protein (194aa)
Plastocyanin n=1 Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NRB0_HALBP
plastocyanin
Plastocyanin {ECO:0000313|EMBL:ADQ67951.1}; Flags: Precursor;; TaxID=469382 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum bor
sw_12_scaffold_6_12
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(10488..10823)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Halogranum salarium B-1 RepID=J2ZVC6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EJN56988.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
sw_12_scaffold_6_13
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11648..11992)
DNA (345bp) protein (115aa)
Putative uncharacterized protein n=1 Tax=Halobacterium sp. DL1 RepID=G4IFC9_9EURY
Uncharacterized protein {ECO:0000313|EMBL:AHG04621.1}; TaxID=751944 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.;" source="Halobacterium sp. DL1.;"
hypothetical protein
sw_12_scaffold_6_14
Haloferax mediterranei, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

12109..13266
DNA (1158bp) protein (386aa)
kinA6; signal transduction histidine kinase / two-component system, OmpR family, sensor histidine kinase CreC (EC:2.7.13.3)
Histidine kinase {ECO:0000313|EMBL:AHZ24096.1}; Signal transduction histidine kinase / two-component system, OmpR family, sensor histidine kinase CreC {ECO:0000313|EMBL:AFK21044.1}; EC=2.7.13.3 {ECO:0
Signal transduction histidine kinase / two-component system, OmpR family, sensor histidine kinase CreC n=1 Tax=Haloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4) RepID=I3R9Y4_HALMT
sw_12_scaffold_6_15
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

13345..14340
DNA (996bp) protein (332aa)
HoxA-like transcriptional regulator n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KTR9_HALAR
HoxA-like transcriptional regulator {ECO:0000313|EMBL:EMA24323.1}; TaxID=1230451 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula arge
hlx1; HoxA-like transcriptional regulator
sw_12_scaffold_6_16
Haloarcula sp. CBA1115, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

14444..15253
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Haloarcula sinaiiensis ATCC 33800 RepID=M0JYV7_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF26261.1}; TaxID=1592728 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula sp. CBA1115.;"
sw_12_scaffold_6_17
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

15322..16023
DNA (702bp) protein (234aa)
ArsR family transcription regulator n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XLL2_NATM8
ArsR family transcription regulator
ArsR family transcription regulator {ECO:0000313|EMBL:CCQ37918.1}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas m
sw_12_scaffold_6_18
Haloferax sulfurifontis, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

16065..17906
DNA (1842bp) protein (614aa)
Glutamyl-tRNA(Gln) amidotransferase subunit D {ECO:0000256|HAMAP-Rule:MF_00586, ECO:0000256|RuleBase:RU004457}; Short=Glu-ADT subunit D {ECO:0000256|HAMAP-Rule:MF_00586};; EC=6.3.5.- {ECO:0000256|HAMA
glutamyl-tRNA(Gln) amidotransferase, subunit D (EC:6.3.5.7)
Glutamyl-tRNA(Gln) amidotransferase subunit D n=1 Tax=Haloferax sulfurifontis ATCC BAA-897 RepID=M0IGV9_9EURY
sw_12_scaffold_6_19
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

17903..18787
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MM70_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA46792.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
hypothetical protein
sw_12_scaffold_6_20
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(18824..19102)
DNA (279bp) protein (93aa)
Ubiquitin-like modifier protein SAMP1 n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IMQ7_NATPD
moaD_1; molybdopterin converting factor, small subunit 1
Ubiquitin-like modifier protein SAMP1 {ECO:0000313|EMBL:CAI50601.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas
sw_12_scaffold_6_21
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

19227..20420
DNA (1194bp) protein (398aa)
Major facilitator superfamily transporter n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IMF7_NATPD
major facilitator superfamily transporter
Major facilitator superfamily transporter {ECO:0000313|EMBL:AGN01792.1}; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Salinarchaeum.;" source="Salinarchaeu
sw_12_scaffold_6_22
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

20463..21305
DNA (843bp) protein (281aa)
hypothetical protein id=24616711 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
Uncharacterized protein {ECO:0000313|EMBL:ESP87298.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Candidatus Halobo
hypothetical protein
sw_12_scaffold_6_23
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

21346..22440
DNA (1095bp) protein (365aa)
Probable glycosyltransferase, type 2 {ECO:0000313|EMBL:CAI50702.1}; EC=2.4.-.- {ECO:0000313|EMBL:CAI50702.1};; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteria
Probable glycosyltransferase, type 2 n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IMF6_NATPD
glycosyltransferase-like protein
sw_12_scaffold_6_24
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

22437..22895
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PQC3_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERJ06120.1}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus tiamatea SARL4
sw_12_scaffold_6_25
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

22947..23552
DNA (606bp) protein (202aa)
Nudix family protein n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N1V4_9EURY
Nudix family protein {ECO:0000313|EMBL:EMA51856.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JCM 1
Mut/nudix family protein
sw_12_scaffold_6_26
Halorubrum lipolyticum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

23703..24479
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Halorubrum lipolyticum DSM 21995 RepID=M0NXB6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA62572.1}; TaxID=1227482 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum lipolyticum DSM 2199
hypothetical protein
sw_12_scaffold_6_27
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

24517..25644
DNA (1128bp) protein (376aa)
FAD dependent oxidoreductase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CBK2_9EURY
FAD dependent oxidoreductase {ECO:0000313|EMBL:ELZ20666.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbaden
glycine/D-amino acid oxidase, deaminating
sw_12_scaffold_6_28
Halogeometricum borinquense, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(25645..26094)
DNA (450bp) protein (150aa)
Molecular chaperone n=1 Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NRG5_HALBP
molecular chaperone
Molecular chaperone {ECO:0000313|EMBL:ELY24073.1}; Molecular chaperone (Small heat shock protein) {ECO:0000313|EMBL:ADQ68006.1}; TaxID=469382 species="Archaea; Euryarchaeota; Halobacteria; Haloferacal
sw_12_scaffold_6_29
unknown

Not on your lists

comp(26150..26341)
DNA (192bp) protein (64aa)

This feature has no annotations

sw_12_scaffold_6_30
Natronorubrum tibetense, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

26406..26918
DNA (513bp) protein (171aa)
Transposase n=1 Tax=Natronorubrum tibetense GA33 RepID=L9VML6_9EURY
Transposase {ECO:0000313|EMBL:ELY38399.1}; TaxID=1114856 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natronorubrum tibetense GA33.;"
tnp; transposase
Displaying items 1-30 of 215 in total

View Taxonomy