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sw_12_scaffold_168

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_168_1
unknown

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1..675
DNA (675bp) protein (225aa)

This feature has no annotations

sw_12_scaffold_168_2
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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809..2044
DNA (1236bp) protein (412aa)
Translation initiation factor 2 subunit gamma n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MD90_9EURY
Translation initiation factor 2 subunit gamma {ECO:0000256|HAMAP-Rule:MF_00119}; aIF2-gamma {ECO:0000256|HAMAP-Rule:MF_00119}; eIF-2-gamma {ECO:0000256|HAMAP-Rule:MF_00119}; TaxID=1227455 species="Arc
tif2g; translation initiation factor IF-2 subunit gamma
sw_12_scaffold_168_3
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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2054..2644
DNA (591bp) protein (197aa)
Putative RNA-binding protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0NBE3_9EURY
Putative RNA-binding protein {ECO:0000313|EMBL:EMA43702.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyt
SSU processome protein utp24
sw_12_scaffold_168_4
Haloarcula hispanica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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2647..3222
DNA (576bp) protein (192aa)
rpoE'; DNA-directed RNA polymerase subunit E' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit E {ECO:0000313|EMBL:AHB64571.1}; EC=2.7.7.6 {ECO:0000313|EMBL:AHB64571.1};; TaxID=1417673 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacter
DNA-directed RNA polymerase subunit E n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0KX16_9EURY
sw_12_scaffold_168_5
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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3226..3423
DNA (198bp) protein (66aa)
Transcription elongation factor Spt4 n=2 Tax=Halococcus RepID=M0N3U6_HALMO
Transcription elongation factor Spt4 {ECO:0000256|HAMAP-Rule:MF_00949}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus
DNA-directed RNA polymerase subunit E, RpoE2
sw_12_scaffold_168_6
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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3427..4194
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MH02_9EURY
UPF0218 protein C449_12837 {ECO:0000256|HAMAP-Rule:MF_00590}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharol
conserved hypothetical protein (DUF359)
sw_12_scaffold_168_7
Haloarcula vallismortis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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4315..4980
DNA (666bp) protein (222aa)
TRK potassium uptake system protein n=1 Tax=Haloarcula vallismortis ATCC 29715 RepID=M0JMS7_HALVA
TRK potassium uptake system protein {ECO:0000313|EMBL:EMA09279.1}; TaxID=662477 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula valli
trkA6; TRK potassium uptake system protein
sw_12_scaffold_168_8
Halarchaeum acidiphilum, Halarchaeum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(5379..6119)
DNA (741bp) protein (247aa)
DNA-binding domain of ModE / Molybdate-binding domain of ModE n=1 Tax=Halarchaeum acidiphilum MH1-52-1 RepID=U3A555_9EURY
DNA-binding domain of ModE / Molybdate-binding domain of ModE {ECO:0000313|EMBL:GAD52774.1}; TaxID=1261545 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae.;" source="H
ModE family transcriptional regulator
sw_12_scaffold_168_9

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6257..7489
DNA (1233bp) protein (411aa)
Molybdate ABC transporter periplasmic substrate-binding protein n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QXC2_9EURY
family 1 extracellular solute-binding protein
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:AEN05475.1}; Flags: Precursor;; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
sw_12_scaffold_168_10

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7520..8554
DNA (1035bp) protein (345aa)
ABC-type transporter, integral membrane subunit n=1 Tax=halophilic archaeon DL31 RepID=G2MK54_9ARCH
ABC transporter
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AEN05476.1}; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
sw_12_scaffold_168_11
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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8551..9630
DNA (1080bp) protein (360aa)
polyamine-transporting ATPase (EC:3.6.3.31)
Spermidine/putrescine ABC transporter ATPase component n=1 Tax=Halogranum salarium B-1 RepID=J3EUW1_9EURY
Spermidine/putrescine ABC transporter ATPase component {ECO:0000313|EMBL:EJN58247.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum s
sw_12_scaffold_168_12
Haloterrigena limicola, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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9858..10352
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0CFI5_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ22001.1}; TaxID=1230457 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena limicola JCM 135
hypothetical protein
sw_12_scaffold_168_13
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(10427..10780)
DNA (354bp) protein (118aa)
Transcriptional regulator n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MXU6_HALMO
Transcriptional regulator {ECO:0000313|EMBL:EMA49255.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM 13
transcriptional regulator
sw_12_scaffold_168_14
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(10999..11529)
DNA (531bp) protein (177aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; N
Non-canonical purine NTP pyrophosphatase n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QNF9_9EURY
Ham1 family protein
sw_12_scaffold_168_15
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(11672..12022)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M0H4_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA39176.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 100
hypothetical protein
sw_12_scaffold_168_16
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(12282..13418)
DNA (1137bp) protein (379aa)
PHP domain-containing protein id=24616722 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
PHP domain-containing protein {ECO:0000313|EMBL:ESP87308.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Candidatus
metal-dependent phosphoesterase, php family
sw_12_scaffold_168_17
Haloarcula sinaiiensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(13797..15428)
DNA (1632bp) protein (544aa)
Trk active potasium channel n=1 Tax=Haloarcula sinaiiensis ATCC 33800 RepID=M0K0H1_9EURY
Trk active potasium channel {ECO:0000313|EMBL:EMA14696.1}; TaxID=662476 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula sinaiiensis A
trk; trk active potasium channel
sw_12_scaffold_168_18
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(15572..17524)
DNA (1953bp) protein (651aa)
Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein n=1 Tax=Halovivax asiaticus JCM 14624 RepID=M0BF18_9EURY
Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein {ECO:0000256|HAMAP-Rule:MF_01447}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteria
serine/threonine-protein kinase
sw_12_scaffold_168_19
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(17572..17874)
DNA (303bp) protein (101aa)
30S ribosomal protein S24e n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LTV3_9EURY
30S ribosomal protein S24e {ECO:0000256|HAMAP-Rule:MF_00545, ECO:0000256|RuleBase:RU004382}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.
rps24e; 30S ribosomal protein S24e
sw_12_scaffold_168_20
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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18183..18578
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Halobiforma lacisalsi AJ5 RepID=M0LS67_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA35279.1}; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma lacisalsi AJ5.;"
hypothetical protein
sw_12_scaffold_168_21
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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18832..19989
DNA (1158bp) protein (386aa)
fdh; formaldehyde dehydrogenase (EC:1.2.1.46); K00148 glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] id=24616335 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
Formaldehyde dehydrogenase {ECO:0000313|EMBL:ESP87727.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Candidatus Hal
Alcohol dehydrogenase GroES domain protein
sw_12_scaffold_168_22
Haloterrigena limicola, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(20060..20242)
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0CQX2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ24807.1}; TaxID=1230457 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena limicola JCM 135
hypothetical protein
sw_12_scaffold_168_23
Haloterrigena turkmenica, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(20349..20762)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) RepID=D2RWI5_HALTV
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB59574.1}; TaxID=543526 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena turkmenica (strai
sw_12_scaffold_168_24
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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20900..21055
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Candidatus Halobonum tyrrellensis G22 RepID=V4HCE2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ESP87728.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Candidatus Halobo
hypothetical protein
sw_12_scaffold_168_25
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(21387..22538)
DNA (1152bp) protein (384aa)
cobalamin synthesis protein P47K id=24616337 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
Cobalamin synthesis protein P47K {ECO:0000313|EMBL:ESP87729.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Candidat
cobalamin synthesis protein P47K
sw_12_scaffold_168_26
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(22640..23452)
DNA (813bp) protein (271aa)
Nicotinate-nucleotide pyrophosphorylase [carboxylating] {ECO:0000256|PIRNR:PIRNR006250}; EC=2.4.2.19 {ECO:0000256|PIRNR:PIRNR006250};; Quinolinate phosphoribosyltransferase [decarboxylating] {ECO:0000
Nicotinate-nucleotide pyrophosphorylase [carboxylating] n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MC49_9EURY
nicotinate-nucleotide pyrophosphorylase
sw_12_scaffold_168_27
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(23685..25187)
DNA (1503bp) protein (501aa)
L-aspartate oxidase n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0MZ22_9EURY
L-aspartate oxidase {ECO:0000313|EMBL:EMA50543.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JCM 13
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
sw_12_scaffold_168_28
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(25191..26306)
DNA (1116bp) protein (372aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00569}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00569};; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae
Quinolinate synthase A (EC:2.5.1.72)
Quinolinate synthase A n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MZK3_9EURY
Displaying 28 items

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